View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_36 (Length: 344)
Name: NF3097_high_36
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 47729137 - 47728815
Alignment:
| Q |
16 |
aatagtacatgatggaccagtgaacaacatatatgcaattgaaggtcaattcattgatgaaatagacaatagcaaaatgagtccttttaaggctaagcac |
115 |
Q |
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| T |
47729137 |
aatagtacatgatggaccagtgaacaacatatatgcaattgaaggtcaattcattgatgaaatagacaatagcaaaatgagtccttttaaggctaagcac |
47729038 |
T |
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| Q |
116 |
cctaacgaggcacacatatttttccttccttttagtgttgcaaatgtggttcaatatgtttataagccaattatgtccaaaaaggatttcaaccgtgaca |
215 |
Q |
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| T |
47729037 |
cctaatgaggcacacatatttttccttccttttagtgttgcaaatgtggttcaatatgtttataagccaattatgtccaaaaaggatttcaaccgtgaca |
47728938 |
T |
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| Q |
216 |
gacttcatagaatggtggaggattatgtaaatgttgtggctcataagtatccttattggaatagaagcaatggtgctgaccattttctcctctcttgtca |
315 |
Q |
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| T |
47728937 |
gacttcatagaatggtggaggattatgtaaatgttgtggctcataagtatccttattggaatagaagcaatggtgctgaccattttctcctctcttgtca |
47728838 |
T |
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| Q |
316 |
tgactgggtaattttcttctcac |
338 |
Q |
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| T |
47728837 |
tgactgggtaattttcttctcac |
47728815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 47726553 - 47726493
Alignment:
| Q |
23 |
catgatggaccagtgaacaacatatatgcaattgaaggtcaattcattgatgaaatagaca |
83 |
Q |
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| T |
47726553 |
catgatggacctgtaaacaacaaatattccattgaaggacaattcattgatgaaatggaca |
47726493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 325
Target Start/End: Complemental strand, 263600 - 263535
Alignment:
| Q |
260 |
aagtatccttattggaatagaagcaatggtgctgaccattttctcctctcttgtcatgactgggta |
325 |
Q |
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| T |
263600 |
aagtatccttattggaacagaagccaaggtgctgaccattttctactttcatgccatgattgggta |
263535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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