View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_38 (Length: 332)
Name: NF3097_high_38
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_38 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 2267959 - 2267640
Alignment:
| Q |
13 |
tgaaattaacttaagtgtaactacgatgtgcctatttatggcatgaccacaaattgagcattggaaaattatcaaagcgcattcggcggtatcttaaagg |
112 |
Q |
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| T |
2267959 |
tgaaattaacttaagtgtaactacaatgtgcctatttatggcatgaccacaaattgagcattggaaaattatcaaagcgcgttcggcggtatcttaaagg |
2267860 |
T |
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| Q |
113 |
ctccactgatcatggccttcttttactgccagaccagtcatctcatttacaggtattttgagatgccaattgggcatctaaccctgatgacaggtgctct |
212 |
Q |
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| T |
2267859 |
ctccactgatcatggccttcttttactgccagaccagtcatctcatttacaggtattttgagatgccaattgggcatccaaccctgatgacaggtgctct |
2267760 |
T |
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| Q |
213 |
aattcagggtctagcacatactttgaaactagtttattttcatggtggtctaaaaagcagcaacaagttgctcattcaagtcttaaaactgagtatcaga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2267759 |
aattcagggtctagcacatactttgaaactagtttattttcatggtggtctaaaaagcagcaacaagttgctcattcaagtcttaaaactgagtatcaga |
2267660 |
T |
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| Q |
313 |
gactagccactagaacaagt |
332 |
Q |
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| T |
2267659 |
gactagccactggaacaagt |
2267640 |
T |
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Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 39 - 228
Target Start/End: Original strand, 650285 - 650476
Alignment:
| Q |
39 |
tgtgcctatttatggcatgaccacaaattgagcattggaaaattatcaaagcgcattcggcggtatcttaaa-ggctccactgatcatggccttctttta |
137 |
Q |
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| T |
650285 |
tgtgccaatttatggcatggccactaaatgagcataggaaaattgtcagagtgcattttgcagtatcttaaaaggctcaactgatcatggccatctttta |
650384 |
T |
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| Q |
138 |
ctgccagaccagtcatctcattt-acaggtattttgagatgccaattgggcatctaaccctgatgacaggtgctctaattcagggtctagca |
228 |
Q |
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| T |
650385 |
ccgacagatcagtcacatcgttttacaggtattttgcgatgccaattgggaatctgaccctgatgacaggtgatctactttagggtctagca |
650476 |
T |
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