View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_44 (Length: 309)
Name: NF3097_high_44
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 10970958 - 10970825
Alignment:
| Q |
1 |
tctgtgtgtttgtgtttttctgtgttcatggagtgtaatgcggtgtcattttttcgaatttgatgtcgtgattgcagcatttgagaagcttggacttgat |
100 |
Q |
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| T |
10970958 |
tctgtgtgtttgtgtttttctgtgttcatggagtgtaatgcggtgtcattttttcgaatttgatgttgtgattgcagcatttgagaagcttggacttgat |
10970859 |
T |
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| Q |
101 |
tgtgcgagttggaatgaacctgtctatacagatc |
134 |
Q |
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| T |
10970858 |
tgtgcgagttggaatgaacctgtctatacagatc |
10970825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 10970757 - 10970655
Alignment:
| Q |
201 |
ctaaattctaatgaaaattgattgctcaattagatttcatgagatcatgttaatctatgcattgaatttcattgaagccttatttgttaagggtttggat |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10970757 |
ctaaattctaatggaaattgattgctcaattagatttcatgagatcatgttaatcaatgcattgaatttcattgaagccttatttgttaagggtttggat |
10970658 |
T |
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| Q |
301 |
ttt |
303 |
Q |
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||| |
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| T |
10970657 |
ttt |
10970655 |
T |
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