View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3097_high_6 (Length: 526)
Name: NF3097_high_6
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 164 - 510
Target Start/End: Original strand, 12069633 - 12069979
Alignment:
| Q |
164 |
aatcacagttgcatagtgattttcttgaagtttgaaagtgtaacttttggaaaatcgcactggcgcactatgatcttatcaaactcaatgccagttcaaa |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12069633 |
aatcacagttgcatagtgattttcttgaagtttcaatgtgtaacttttggaaaatcgcactggcgcactgtgatcttatcaaactcaatgccagttcaaa |
12069732 |
T |
|
| Q |
264 |
catgcatgaaagtttttacttgacttacaatgggttcagaaatgtatcgtatctcacttttcacaaagccgcatgtatggcagtatattccaatttgttc |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12069733 |
catgcatgaaagtttttacttgacttacaatgggttcataaatgtatcgtatctcagttttcacaaagtcgcatgtatggcagtatattccaatttgttc |
12069832 |
T |
|
| Q |
364 |
atccaatcgataatcatgttcacatatttccttggattctttctttgtgtcagctaaatcctcatcagaatttgcaccctgctatggtaattaatatttg |
463 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12069833 |
atccaatcgataatcatgttctcatatttccttgaattctttctttgtgtcagctaaatcctcatcagcatttgcaccctgctatggtaattaatatttg |
12069932 |
T |
|
| Q |
464 |
aacataatcagcctttagccttaacatagaagataaaaccaaaaaac |
510 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12069933 |
aacataatcagcctttagccttaaaatagaagataaaaccaaaaaac |
12069979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 81 - 510
Target Start/End: Complemental strand, 36374592 - 36374166
Alignment:
| Q |
81 |
atcaatagttaacatatccaaccaaataagaaactgaatttacatgtataattccaagtttgaaatcatggtgaatctggtaaaatcacagttgcatagt |
180 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
36374592 |
atcaatagaaaacatatccaaccaaataaggaactaaatttacatgtataattaaaagtttgaaatcatggtggatctggtaaaatcacagctgcatagt |
36374493 |
T |
|
| Q |
181 |
gattttcttgaagtttgaaagtgtaacttttggaaaatcgcactggcgcactatgatcttatcaaactcaatgccagttcaaacatgcat-ga------- |
272 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| || | |||| |||| |||||||| ||| ||| ||||||||||||||| || |
|
|
| T |
36374492 |
gattttcttgaagtttcaaagtgtaacttttggaaaatcgcagtgacacactgtgattttatcaaattcattgcgagttcaaacatgcatagattattca |
36374393 |
T |
|
| Q |
273 |
-aagtttttacttgacttacaatgggttcagaaatgtatcgtatctcacttttcacaaagccgcatgtatggcagtatattccaatttgttcatccaatc |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36374392 |
taagtttttacttgacttacaatgggttcagaaatgtatcgtatctcagttttcacaaagccgcatgtacggcagtatattccaatttgttcatccaatc |
36374293 |
T |
|
| Q |
372 |
gataatcatgttcacatatttccttggattctttctttgtgtcagctaaatcctcatcagaatttgcaccctgctatggtaattaatatttgaacataat |
471 |
Q |
| |
|
|||||||||||| || ||||||| ||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
36374292 |
gataatcatgtttac------------attctttatttgtgtcagctaaaacctcatcaccatttgcaccctgctatggtatataataattgaacataat |
36374205 |
T |
|
| Q |
472 |
cagcctttagccttaacatagaagataaaaccaaaaaac |
510 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||||||||| |
|
|
| T |
36374204 |
cagcctttagccttaaaatagacggtaaaaccaaaaaac |
36374166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 276 - 419
Target Start/End: Original strand, 32251159 - 32251302
Alignment:
| Q |
276 |
tttttacttgacttacaatgggttcagaaatgtatcgtatctcacttttcacaaagccgcatgtatggcagtatattccaatttgttcatccaatcgata |
375 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||||| || |||||||||| || ||| | | |||||||||||||||| ||||||||||| ||| |
|
|
| T |
32251159 |
tttttacttgacttacaaatggctcagaaatgtcccgtattgcagttttcacaaatccacatcgaagacagtatattccaatttcttcatccaatctata |
32251258 |
T |
|
| Q |
376 |
atcatgttcacatatttccttggattctttctttgtgtcagcta |
419 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||| || ||||||| |
|
|
| T |
32251259 |
atcatgttcacaactttcattgaattctttcttggtatcagcta |
32251302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 276 - 408
Target Start/End: Complemental strand, 38208308 - 38208177
Alignment:
| Q |
276 |
tttttacttgacttacaatgggttcagaaatgtatcgtatctcacttttcacaaagccgcatgtatggcagtatattccaatttgttcatccaatcgata |
375 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| || || ||| ||||||||||||||||| || || |||||||||||||| |||||| ||| ||| |
|
|
| T |
38208308 |
tttttacttaacttacaaagggttcagaaatgtctcctacctcggttttcacaaagccgcatctaagg-tgtatattccaatttcttcatctaatttata |
38208210 |
T |
|
| Q |
376 |
atcatgttcacatatttccttggattctttctt |
408 |
Q |
| |
|
| ||| ||||| |||| |||| |||| ||||| |
|
|
| T |
38208209 |
gttatgctcacaaatttacttgaattccttctt |
38208177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 508
Target Start/End: Original strand, 32228619 - 32228841
Alignment:
| Q |
283 |
ttgacttacaatgggttcagaaatgtatcgtatctcacttttcacaaagccgcatgtatggcagtatattccaatttgttcatccaatcgataatcatgt |
382 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||| ||||| || || | |||||||||||| | |||| ||||| ||| |||||| |
|
|
| T |
32228619 |
ttgacttacaatgggttcagaaatgtctcgtatctctaccttcatgaagccatatctaagctagtatattccaacatcttcacccaatttatagtcatgt |
32228718 |
T |
|
| Q |
383 |
tcacatatttccttggattctttctttgtgtcagctaaatcctcatcagaatttgcaccctgctatggtaattaatatttgaacataatcagcctttagc |
482 |
Q |
| |
|
| || |||||||| ||| ||| || || || |||||| |||| || ||| |||||||||||||| ||||| |||||| || ||||||||||| |
|
|
| T |
32228719 |
ttactaatttccttagatattttattggtatctgctaaaacctctgcac---ttgaaccctgctatggtatataatagttgaactaaagcagcctttagc |
32228815 |
T |
|
| Q |
483 |
cttaacatagaagataaaaccaaaaa |
508 |
Q |
| |
|
| | | |||||||||||||||||||| |
|
|
| T |
32228816 |
catgaaatagaagataaaaccaaaaa |
32228841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 510
Target Start/End: Original strand, 32251327 - 32251380
Alignment:
| Q |
457 |
atatttgaacataatcagcctttagccttaacatagaagataaaaccaaaaaac |
510 |
Q |
| |
|
|||||||||| |||||| ||||||||||| | |||||||||||||||||||| |
|
|
| T |
32251327 |
atatttgaactgaatcagactttagccttataaaagaagataaaaccaaaaaac |
32251380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 395
Target Start/End: Original strand, 8845552 - 8845671
Alignment:
| Q |
276 |
tttttacttgacttacaatgggttcagaaatgtatcgtatctcacttttcacaaagccgcatgtatggcagtatattccaatttgttcatccaatcgata |
375 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||| || | ||| ||||||| |||| ||||| || ||| |
|
|
| T |
8845552 |
tttttacttgacttacaactggttcagaaatgtctcgtatctcggttttcacagagccgcagctaagacagaatattccgatttcttcattgaacgtata |
8845651 |
T |
|
| Q |
376 |
atcatgttcacatatttcct |
395 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
8845652 |
gtcatgttcacaaatttcct |
8845671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 336
Target Start/End: Original strand, 8809664 - 8809724
Alignment:
| Q |
276 |
tttttacttgacttacaatgggttcagaaatgtatcgtatctcacttttcacaaagccgca |
336 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||||| |||||| | |||||| ||||||| |
|
|
| T |
8809664 |
ttttcacttgacttacaatgtgttcataaatgtatcatatctcgttattcacagagccgca |
8809724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 324 - 387
Target Start/End: Original strand, 35960810 - 35960873
Alignment:
| Q |
324 |
tcacaaagccgcatgtatggcagtatattccaatttgttcatccaatcgataatcatgttcaca |
387 |
Q |
| |
|
|||||||||| ||| || ||||||||||||||||| ||||||||||| || |||||||||||| |
|
|
| T |
35960810 |
tcacaaagccacatatacagcagtatattccaatttcttcatccaatctattatcatgttcaca |
35960873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University