View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_60 (Length: 254)
Name: NF3097_high_60
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_60 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 6128964 - 6128739
Alignment:
| Q |
13 |
tgaaacggaagaagtacgttaaagcgtattcaaatcaagaatttcctaattctcttgtatttagaaatttttccaactaactcttttaaaacaaaaataa |
112 |
Q |
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| T |
6128964 |
tgaaacggaagaagtacattaaagcgtattcaaatcaagaatttcctaattctct-gtatttagaaatttttccaactaactcttt-aaaacaaaaataa |
6128867 |
T |
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| Q |
113 |
atgctaggaaaatttcaatatacctgatgaaatttgatatcctttttgcctgagcaaacgaaatgctaacgcaagaaagtgaaggccaccttcattagta |
212 |
Q |
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| T |
6128866 |
atgctaggaaaatttcaatatacctgatgaaatttgatatcctttttgccagagcaaacgaaatgctaacgcaagaaagtgaaggccaccttcattagtg |
6128767 |
T |
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| Q |
213 |
gttatttccttattgttagtaaattttg |
240 |
Q |
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| T |
6128766 |
gttatttccttattgttagtaaattttg |
6128739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 232
Target Start/End: Original strand, 34450965 - 34451061
Alignment:
| Q |
136 |
ctgatgaaatttgatatcctttttgcctgagcaaacgaaatgctaacgcaagaaagtgaaggccaccttcattagtagttatttccttattgttagt |
232 |
Q |
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| T |
34450965 |
ctgatgaaatgtgatatccttttttcctaagcaaacgaaattctaatgcaaggaagtgaagggaaccttcttttgtggttatttccttattcttagt |
34451061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 34461733 - 34461806
Alignment:
| Q |
132 |
atacctgatgaaatttgatatcctttttgcctgagcaaacgaaatgctaacgcaagaaagtgaaggccaccttc |
205 |
Q |
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| T |
34461733 |
atacctgaagacatgtgatgtcctttttgcctaagcaaacgaaatactaacgcaagaaagtgaaggtcaccttc |
34461806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 34487778 - 34487857
Alignment:
| Q |
156 |
ttttgcctgagcaaacgaaatgctaacgcaagaaagtgaaggccaccttcattagtagttatttccttattgttagtaaa |
235 |
Q |
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| T |
34487778 |
ttttgcctaagcaaacgaaatgctaatgcaaggaagtgaagggagccttcttttgtggttatttccttattgttggtaaa |
34487857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 34475534 - 34475604
Alignment:
| Q |
165 |
agcaaacgaaatgctaacgcaagaaagtgaaggccaccttcattagtagttatttccttattgttagtaaa |
235 |
Q |
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| T |
34475534 |
agcaaacgaaatgctaatgcaaggaagtgaagggaaccttcttctgtggttatttccttattgttggtaaa |
34475604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 1595126 - 1595193
Alignment:
| Q |
138 |
gatgaaatttgatatcctttttgcctgagcaaacgaaatgctaacgcaagaaagtgaaggccaccttc |
205 |
Q |
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| T |
1595126 |
gatgaaatgtgatgtcctttttgcctaagcaaacgaaatgctaatgcacaaaagtgaaggccaccttc |
1595193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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