View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_67 (Length: 250)
Name: NF3097_high_67
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_67 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 100 - 250
Target Start/End: Original strand, 27893870 - 27894020
Alignment:
| Q |
100 |
tatagttgaaggataaacttttcatttcgtatcgcataaaacacatgaggtttttctttgtttcaaccactgagcttaaattcgatgatttgcatctgct |
199 |
Q |
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| T |
27893870 |
tatagttgaaggataaacttttcatttcgtatcgcataaaacacatgaggtttttctttgtttcaaccactgagcttaaattcgatgatttgcatctgct |
27893969 |
T |
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| Q |
200 |
tctacgattaaatccatcataaattcatttaaacaaataccatacatgcca |
250 |
Q |
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| T |
27893970 |
tctacgattaaatccatcataaattcatttaaacaaataccatacatgcca |
27894020 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 18124983 - 18124904
Alignment:
| Q |
124 |
tttcgtatcgcataaaacacatgaggtttttctttgtttcaaccactgagcttaaattcgatgatttgcatctgcttcta |
203 |
Q |
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| T |
18124983 |
tttcttatcacataaaacacctgaggtttttctccatttcaaccattcagcttgaattcgatgagttacatctgcttcta |
18124904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 42854479 - 42854558
Alignment:
| Q |
124 |
tttcgtatcgcataaaacacatgaggtttttctttgtttcaaccactgagcttaaattcgatgatttgcatctgcttcta |
203 |
Q |
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| T |
42854479 |
tttcttatcgcacaaaacacatgaggctcttctccatttcaaccacccagcttgaatacgatgatttacatctgcttcta |
42854558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 3301656 - 3301577
Alignment:
| Q |
124 |
tttcgtatcgcataaaacacatgaggtttttctttgtttcaaccactgagcttaaattcgatgatttgcatctgcttcta |
203 |
Q |
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| T |
3301656 |
tttcttatcgcacaaaacacctgaggctcatctctatttcaaccacccagcttgaatacgatgatttgcatctgcttcta |
3301577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 16002699 - 16002656
Alignment:
| Q |
160 |
tttcaaccactgagcttaaattcgatgatttgcatctgcttcta |
203 |
Q |
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| T |
16002699 |
tttcaaccactcagcttaaatacgatgatttacatctgcttcta |
16002656 |
T |
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