View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3097_high_68 (Length: 249)
Name: NF3097_high_68
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_68 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 53614150 - 53614381
Alignment:
| Q |
1 |
cagatttgtagacttgcctgttcttcaaaaagggtgaataaatcaaagtcctgaaacatggctatcagttgaaacgcgttaatgaagctagaagacttgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
53614150 |
cagatttgtagacttgcctgttcttcaaaaagggtgaataaatcaaagtcctgaaacatggctatcagttgaaacgcgttaatgaagcttgaagacttgg |
53614249 |
T |
|
| Q |
101 |
ttatccttggctttgtagttttctcctatagcacatatagtcagacaatttggttcataactccaattgagtgttttctatgactactatttggtaacaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
53614250 |
ttatccttggctttgtagttttctcctatagcacatatagtcagacaatttggttcataactccaattgagtgttttctatgactgctatttggtagcaa |
53614349 |
T |
|
| Q |
201 |
attacctcaattgaattgaaagcacaactatc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
53614350 |
attacctcaattgaattgaaagcacaactatc |
53614381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University