View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3097_high_7 (Length: 522)
Name: NF3097_high_7
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 46 - 513
Target Start/End: Complemental strand, 11901777 - 11901309
Alignment:
| Q |
46 |
aaggtaagccaagtcaaagatatagacaaaaagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcaca |
145 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11901777 |
aaggtaagccatgtcaaagatatagaccgaaagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatcgtcaca |
11901678 |
T |
|
| Q |
146 |
ccttgtctaactggctccattccatccaatgtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccaca |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11901677 |
ccttgtctaactggctccattccatccagtgtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccaca |
11901578 |
T |
|
| Q |
246 |
tctcaaggttctccaacttcggagactggactctctgaaattcattgaagnnnnnnntcaagttggtaataccccttcctctactacagcaata-nnnnn |
344 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
11901577 |
tctcaaggttctccaaattcggagactggactctctgaaattcattgcagaaaacaatcaagttggtaattccccttcctctactaccccaatattgttt |
11901478 |
T |
|
| Q |
345 |
nnnccatccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgca |
444 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11901477 |
tttccatccttgaaggaacttacaatttcggattgtcctaatctgaaaagttggtgggaaaatgagatttggggtaatgatagaccatatttcagttgca |
11901378 |
T |
|
| Q |
445 |
tttcaaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatg |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11901377 |
tttcaaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatg |
11901309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 76 - 513
Target Start/End: Original strand, 12039554 - 12039992
Alignment:
| Q |
76 |
aagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaat |
175 |
Q |
| |
|
|||| |||||| ||| ||| ||||| | ||||| |||||| | ||||||||||||||||||||||||||||||||||| ||||| || ||| | || | |
|
|
| T |
12039554 |
aagtcgcttgactgtattgtgccaccttcgaatctgagagtgttattcattgtggggtacaatggtcacaccttgtctgactggttcggttcacttcatt |
12039653 |
T |
|
| Q |
176 |
gtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaacttcggagactgga |
275 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
12039654 |
gtcttgttaagtttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagcttccacatctcaaggttctccaacttcgaaggttgga |
12039753 |
T |
|
| Q |
276 |
ctctctgaaattcattgaagnnnnnnntcaagttggtaataccccttcctctactacagcaata-nnnnnnnnccatccttgaaggaacttacaatctcg |
374 |
Q |
| |
|
||| ||||||||||||| | ||||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
12039754 |
ctcactgaaattcattgcaaaaaacaatcaagttggtaatttcccttcctttactacaccaatattattttttccatccttgaaggaacttacaatctcg |
12039853 |
T |
|
| Q |
375 |
gattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgcatttcaaaactaaacatccaatgttgtccta |
474 |
Q |
| |
|
|||||||| ||||| || ||||||||| ||| |||||| |||| |||||||||||||| ||||||||||||||| |||||||| |||||| ||| || | |
|
|
| T |
12039854 |
gattgtccaaatctaaacagttggtgggaaactgagatatgggataatgatagaccatctttcagttgcatttccaaactaaatgtccaatattgcccca |
12039953 |
T |
|
| Q |
475 |
aattagcttgcatgcctctatatcctggtcttgatgatg |
513 |
Q |
| |
|
| |||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
12039954 |
agttagcttgcatgccactatatcctaatcttgatgatg |
12039992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 81 - 292
Target Start/End: Original strand, 11828659 - 11828870
Alignment:
| Q |
81 |
gcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaatgtctt |
180 |
Q |
| |
|
|||||||||||| |||||||||| ||| || || |||||| |||| |||||||| |||||||| ||||||||||||||| ||| | ||||| ||| |
|
|
| T |
11828659 |
gcttgattgtctccagccacatccaaatctgcaagtgctattagttgtcgggtacaacggtcacacattgtctaactggctcgcttcacttcaatgcctt |
11828758 |
T |
|
| Q |
181 |
gttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaacttcggagactggactctc |
280 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11828759 |
gttaagtttaccttgaatgactgtcccaaatgcgaatttctcccaccaatggatgagcttccacatctcaaggttctccaacttcggagattggactctt |
11828858 |
T |
|
| Q |
281 |
tgaaattcattg |
292 |
Q |
| |
|
||||||| |||| |
|
|
| T |
11828859 |
tgaaatttattg |
11828870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 85 - 292
Target Start/End: Original strand, 11860795 - 11861002
Alignment:
| Q |
85 |
gattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaatgtcttgtta |
184 |
Q |
| |
|
|||||||| |||||||||| |||| ||| || |||||| |||| |||||| |||| |||| |||||||| |||||| ||| | |||| |||| || |
|
|
| T |
11860795 |
gattgtctcgagccacatcagaatctgaaagagctattagttgtcgggtaccatggccacatgttgtctaattggctcgcttcacttcaattccttggta |
11860894 |
T |
|
| Q |
185 |
agtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaacttcggagactggactctctgaa |
284 |
Q |
| |
|
| ||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
11860895 |
aatttaccttgaacgactgtcccaattgcaaatttctcccaccaatggatcagcttccacatctcaaggttctccaacttcggagattggactctttgaa |
11860994 |
T |
|
| Q |
285 |
attcattg |
292 |
Q |
| |
|
|||||||| |
|
|
| T |
11860995 |
attcattg |
11861002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 348 - 513
Target Start/End: Original strand, 11861038 - 11861203
Alignment:
| Q |
348 |
ccatccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgcattt |
447 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||| |||||||||||| |||| || || ||| ||||||||||||| |||||||||||||| |
|
|
| T |
11861038 |
ccatccttgaaggaacttgcaatctcagattgtcctaatctaaaaagttggtgggaaaaagacatacgggaaaatgatagaccatctttcagttgcattt |
11861137 |
T |
|
| Q |
448 |
caaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatg |
513 |
Q |
| |
|
|||| ||||| ||||||| ||||||| | ||||||| |||||| |||||||| ||||||||||||| |
|
|
| T |
11861138 |
caaagctaaatatccaatattgtcctcagttagcttccatgccactatatcccggtcttgatgatg |
11861203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 348 - 513
Target Start/End: Original strand, 11828906 - 11829071
Alignment:
| Q |
348 |
ccatccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgcattt |
447 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| ||| || ||| |||||||| ||||||| || |||| ||||||||||||| |||||||||||||| |
|
|
| T |
11828906 |
ccatccttgaaggaactaacaatctcagattgtcttaaactaaaaggttggtgggaaaatgacatatgggacaatgatagaccatctttcagttgcattt |
11829005 |
T |
|
| Q |
448 |
caaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatg |
513 |
Q |
| |
|
|||| ||||| ||||||| |||||| ||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
11829006 |
caaagctaaatatccaatactgtcctcaattagcttgcatgctgctctatcccggtcttgatgatg |
11829071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 76 - 292
Target Start/End: Original strand, 11732458 - 11732674
Alignment:
| Q |
76 |
aagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaat |
175 |
Q |
| |
|
||||| ||||| ||||| | |||| ||| ||||||| || ||||||||||| ||||||||||| | |||||| ||||| |||||| |||| | |||| |
|
|
| T |
11732458 |
aagttacttgaatgtctccaaccacctcccaatttgaaagttctattcattgtagggtacaatggccgcaccttatctaaatggctcgattcgcttcaat |
11732557 |
T |
|
| Q |
176 |
gtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaacttcggagactgga |
275 |
Q |
| |
|
| ||||||||||||||||||| |||||||| |||||| | ||||| || ||||| ||||| |||||| ||||||||| |||||| |||||||| |||| |
|
|
| T |
11732558 |
gccttgttaagtttaccttgagtgactgtcctaaatgcaaatttctaccgccaatcgatcaccttccaaatctcaaggctctccatcttcggaggttgga |
11732657 |
T |
|
| Q |
276 |
ctctctgaaattcattg |
292 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
11732658 |
atctcttgaattcattg |
11732674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 490
Target Start/End: Original strand, 11732735 - 11732876
Alignment:
| Q |
352 |
ccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatga---gatttggggtaatgatagaccatatttcagttgcatttc |
448 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| || ||||||||||| ||||||| || | | || | ||||||| |||| ||||||||| |
|
|
| T |
11732735 |
ccttgaaggagcttacaatttcggattgtcctaaactcgaaagttggtgggaaaatgataagacattgaaaaaaaacagaccatctttcccttgcatttc |
11732834 |
T |
|
| Q |
449 |
aaaactaaacatccaatgttgtcctaaattagcttgcatgcc |
490 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| ||| |||| |
|
|
| T |
11732835 |
aaaactaaatatccgatgttgtcctaaattagcatgcgtgcc |
11732876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University