View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_70 (Length: 249)
Name: NF3097_high_70
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_70 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 52380207 - 52380386
Alignment:
| Q |
1 |
aattcttaagaattttacagccttgtggcggtggggattagataccaattcccactgttatagtcattatattcggtaacaacataaggcaaagaaagat |
100 |
Q |
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| T |
52380207 |
aattcttaagaattttacagccttgtggcggtggggattagataccaattcccactgttatagtcattatattcggtaacaacatgaggcaaagaaagat |
52380306 |
T |
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| Q |
101 |
attatgcgtcctttcattcaagctagatagcgagataactctagaatcattatctcgtcacttatttttgcaacttgagg |
180 |
Q |
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| T |
52380307 |
attatgcgtcctttcattcaagctagatagcgagataactctagaatcattatctcgtcacttatttttgcaacttgagg |
52380386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 52380400 - 52380440
Alignment:
| Q |
201 |
ctacttactcttttttctcgatcacatcattatattcattt |
241 |
Q |
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| T |
52380400 |
ctacttactcttttttctcgatcacatcattatattcattt |
52380440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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