View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_72 (Length: 248)
Name: NF3097_high_72
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_72 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 7290277 - 7290045
Alignment:
| Q |
1 |
atcaacttgcatcaagaatataaggaatataatcattgattactgatactcttaaagaaacactacaatccttaatatccaatatatccacaatgtgaat |
100 |
Q |
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| T |
7290277 |
atcaacttgcatcaagaatacaaggaatataatcattgattactgatactcttaaagaaacactacaatccttaatatccaatatatccacaatgtgaat |
7290178 |
T |
|
| Q |
101 |
attaataaaaggagaaaaataactgatagctgctagaaaatccattgctttaatattcaaatagagaattttaagttgttgtttgtattaaactacaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | |
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| T |
7290177 |
attaataaaaggagaaaaataactgatagctgctagaaaatccattgctttaatactcaaatagagaattttaagttgttgtttgtattaaactaccacc |
7290078 |
T |
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| Q |
201 |
atataagattcataatataagaaatataaaagt |
233 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
7290077 |
atataggattcataatataagaaatataaaagt |
7290045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 34452469 - 34452393
Alignment:
| Q |
89 |
cacaatgtgaatattaataaaa-ggagaaaaataactgatagctgctagaaaatcc--attgctttaatattcaaat |
162 |
Q |
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||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
34452469 |
cacaatgtgaatattaaaaaaaaggagagaaataactgatagctgctagaaaatccatattgctttaatactcaaat |
34452393 |
T |
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