View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_76 (Length: 245)
Name: NF3097_high_76
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_76 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 13102843 - 13103082
Alignment:
| Q |
1 |
caggaagaatatcaggtgcatctgcagttcttccatccttgaaaaataatatcataccaaacacacaataatgtcaacaaaatctagcagagattacaat |
100 |
Q |
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| T |
13102843 |
caggaagaatatcaggtgcatctgcagttcttccatccttgaaaaatgatatcataccaatcacacaagaatgtcaacaaaatctagcagagattacaat |
13102942 |
T |
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| Q |
101 |
gacatgaaagaatcaaatcgtaagcaccctaatataaaaattctgtcaagcaaggaaaaaataacttaagatggtttcgaagaaattggtagaaggtaca |
200 |
Q |
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| T |
13102943 |
gacatgaaagaatcaaatcgtaagcaccctaatataaaaattctgtcaagcaaggaaaaaataacttaagatggtttcgaagaaattggtagaaggtaca |
13103042 |
T |
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| Q |
201 |
tacaataggaacaacaggatacaatctcaatgtctctgtg |
240 |
Q |
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| T |
13103043 |
tacaataggaacaacaggatacaatctcaatgtctctgtg |
13103082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 13095513 - 13095622
Alignment:
| Q |
1 |
caggaagaatatcaggtgcatctgcagttcttccatccttgaaaaataatatcataccaaacacacaataatgtcaacaaaatctagcagagattacaat |
100 |
Q |
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| T |
13095513 |
caggaagaatatcaggtgcatccgcagttcttccatccttgaaaaatagtatcataccaaagacacaagaatgtcaacaaaatctagcagagattacaat |
13095612 |
T |
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| Q |
101 |
gacatgaaag |
110 |
Q |
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| T |
13095613 |
gacatgaaag |
13095622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 13113973 - 13114056
Alignment:
| Q |
157 |
aaaaataacttaagatggtttcgaagaaattggtagaaggtacatacaataggaacaacaggatacaatctcaatgtctctgtg |
240 |
Q |
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| T |
13113973 |
aaaaataattcaagatggttttgaagaaattggtagaaggtacatacaacagggagtacagggtacaatctcaatgtctctgtg |
13114056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 13113687 - 13113769
Alignment:
| Q |
3 |
ggaagaatatcaggtgcatctgcagttcttccatccttgaaaaataatatcataccaaacacacaataatgtcaacaaaatcta |
86 |
Q |
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| T |
13113687 |
ggaagaacatccggcgcatcagcagttcttccatccttgaaaaatagtatcataac-aagacacaaaaatatcatcaaaatcta |
13113769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 18670935 - 18670853
Alignment:
| Q |
3 |
ggaagaatatcaggtgcatctgcagttcttccatccttgaaaaataatatcataccaaacacacaataatgtcaacaaaatcta |
86 |
Q |
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||||||| ||| || ||||| ||||||||||||||||||||||||| ||||||| | || |||||| ||| ||| ||||||||| |
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| T |
18670935 |
ggaagaacatccggcgcatcagcagttcttccatccttgaaaaatagtatcataac-aagacacaaaaatatcatcaaaatcta |
18670853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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