View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3097_high_78 (Length: 241)
Name: NF3097_high_78
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_78 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 41079720 - 41079495
Alignment:
| Q |
1 |
tacatctaaacaaatcactttatgatgccacctttttgggttagttcctaaaaatgattttattggatgcaaaaaatttacaccatcacttcataattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41079720 |
tacatctaaacaaatcactttatgatgccaccaatttgggttagttcctaaaaatgattttattggatgcacaaaatttacaccatcacttcataattaa |
41079621 |
T |
|
| Q |
101 |
ttctatctataatgctatcttattttatatctaaacctaaacctaaaaaacgatatctaggcataatattctcaacacttg-ttgcaaccaagtgattac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41079620 |
ttctatctataatgctatcttattttatatctaaacctaaacctaaaaaacgatatctaggcataatattctcaacacttgtttgcaaccaagtgattac |
41079521 |
T |
|
| Q |
200 |
atgaaatgtatcaatcatcattttct |
225 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
41079520 |
atgaaatgtatcaatcatcattttct |
41079495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 41090991 - 41090959
Alignment:
| Q |
41 |
ttagttcctaaaaatgattttattggatgcaaa |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
41090991 |
ttagttcctaaaaatgattttattggatgcaaa |
41090959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 41101272 - 41101200
Alignment:
| Q |
102 |
tctatctataatgctatcttattttatatctaaacctaaacctaaaaaacgatatctaggcataatattctca |
174 |
Q |
| |
|
||||||||||| | ||| ||| | || ||||||||||||| || ||||||||||| ||||| ||||||||||| |
|
|
| T |
41101272 |
tctatctataacgatattttactataaatctaaacctaaatcttaaaaacgatatttaggcttaatattctca |
41101200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 15596421 - 15596460
Alignment:
| Q |
14 |
atcactttatgatgccacctttttgggttagttcctaaaa |
53 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
15596421 |
atcactttatgatgccagctttttaggttagttcctaaaa |
15596460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 41101171 - 41101136
Alignment:
| Q |
189 |
caagtgattacatgaaatgtatcaatcatcattttc |
224 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41101171 |
caagtgattacatgaaatggatcaatcatcattttc |
41101136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University