View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_86 (Length: 238)
Name: NF3097_high_86
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_86 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 403951 - 403732
Alignment:
| Q |
1 |
ttaatcaatacatttgaacagagaatgactttctgccccagaactcaccatagtttgaacaaaaacagttaaataagaaattcatat--cattacaatac |
98 |
Q |
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| T |
403951 |
ttaatcaatacatttgaacagagaatgactttctgccccagaacccaccatagtttgaataaaaacagttaaataagacattcatatatcattacaatac |
403852 |
T |
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| Q |
99 |
aagcaggtggaattaaatattaaggggcaaaaatagagagcatgaaggtaagaaactaggaaatgaatattttgatcattagcaacttggcattatcatt |
198 |
Q |
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| T |
403851 |
aagcaggtggaattaaatattaagggactagaagaaagagcatcaaattaagaaacttgggaatgaatactttgatcattaacaacttggcattattatt |
403752 |
T |
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| Q |
199 |
tatcaacttggcatacttgg |
218 |
Q |
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||| ||||||||||||||| |
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| T |
403751 |
catccacttggcatacttgg |
403732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 405548 - 405470
Alignment:
| Q |
126 |
caaaaatagagagcatgaaggtaagaaactaggaaatgaatattttgatcattagcaacttggcattatcatttatcaa |
204 |
Q |
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|||||||| ||||||||||||||| ||||| || |||| ||| ||| |||||| ||||||||||||||| ||| ||||| |
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| T |
405548 |
caaaaataaagagcatgaaggtaataaacttgggaatggatactttcatcattggcaacttggcattattattcatcaa |
405470 |
T |
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