View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_90 (Length: 237)
Name: NF3097_high_90
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_90 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40639636 - 40639853
Alignment:
| Q |
1 |
tgttgggttgcaggtgagaaattgggtttggcaacttcaccaccttacctctccttaatatcaaagggtaacaaaaatgaaaataatgtatccttcataa |
100 |
Q |
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| T |
40639636 |
tgttgggttgcaggtgagaaattgggtttggcaacttcaccaccttacctctccttaatatcaaagggtaacaaaaatgaaaataatgcatccttcataa |
40639735 |
T |
|
| Q |
101 |
atggtgttagctttgcttccgcaggtgctggaatatttgatggtacagatgaacgctatgtaagtcaccaattttatattcttttgaatgaagaagaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40639736 |
atggtgttagctttgcttccgcaggtgctggaatatttgatggtacagatgaacgctatgtaagtcaccaattttatattcttttgaat---gaagaata |
40639832 |
T |
|
| Q |
201 |
atatcgttctcattttgttca |
221 |
Q |
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||||||||||||||||||||| |
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| T |
40639833 |
atatcgttctcattttgttca |
40639853 |
T |
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