View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3097_high_99 (Length: 217)

Name: NF3097_high_99
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3097_high_99
NF3097_high_99
[»] chr2 (17 HSPs)
chr2 (1-202)||(39421777-39421978)
chr2 (3-187)||(39459164-39459348)
chr2 (6-202)||(39414732-39414928)
chr2 (1-169)||(39473354-39473522)
chr2 (86-181)||(39137800-39137895)
chr2 (3-170)||(39381458-39381625)
chr2 (48-183)||(39192432-39192567)
chr2 (48-183)||(39198112-39198247)
chr2 (46-171)||(39215560-39215685)
chr2 (3-183)||(39397796-39397976)
chr2 (9-187)||(39161754-39161932)
chr2 (9-187)||(39207262-39207440)
chr2 (4-185)||(39370022-39370203)
chr2 (48-180)||(39222804-39222936)
chr2 (9-132)||(39389090-39389213)
chr2 (6-183)||(39468255-39468432)
chr2 (122-187)||(39152496-39152561)
[»] chr6 (1 HSPs)
chr6 (3-183)||(16113215-16113395)
[»] chr7 (2 HSPs)
chr7 (86-150)||(19807781-19807845)
chr7 (1-65)||(19807854-19807918)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 39421777 - 39421978
Alignment:
Q  1 ctctgtcaactcaggctccttcagttgttcatctaacttatttagctttgactcaggatccttgactagtgctccaattcgcttgtcttttaatttgagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  39421777 ctctgtcaactcaggctccttcagttgttcatctaacttatttagcttcgactcgggatccttgactagtgctccaaatcgcttgtcttttaatttgagc 39421876  T
Q  101 tcattcaccagtactttgaacttattctcttttgacttgagttctttccattgttcttcaaatttcttctcgtttaatttgaagtccgtaacctgacctt 200  Q
    || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39421877 tctttcactagtactttgaacttattctcttttgacttgagttctttccattgttcttcaaatttcttctcgtttaatttgaagtccgtaacctgacctt 39421976  T
Q  201 tg 202  Q
    ||    
T  39421977 tg 39421978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 39459348 - 39459164
Alignment:
Q  3 ctgtcaactcaggctccttcagttgttcatctaacttatttagctttgactcaggatccttgactagtgctccaattcgcttgtcttttaatttgagctc 102  Q
    ||||||||||||||||||||| |||| |||| || ||||| ||||||||||| |||||||||||| || || ||| | ||||||||||||| ||||||||    
T  39459348 ctgtcaactcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctc 39459249  T
Q  103 attcaccagtactttgaacttattctcttttgacttgagttctttccattgttcttcaaatttcttctcgtttaatttgaagtcc 187  Q
     ||||| ||||||||||||||||||||||  |  | || ||||||||  ||||||||||||| |||||| |||||||||||||||    
T  39459248 tttcactagtactttgaacttattctcttcagcatcgaattctttccgctgttcttcaaattgcttctcttttaatttgaagtcc 39459164  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 39414732 - 39414928
Alignment:
Q  6 tcaactcaggctccttcagttgttcatctaacttatttagctttgactcaggatccttgactagtgctccaattcgcttgtcttttaatttgagctcatt 105  Q
    ||||||||| ||||||| | ||| |||| || || |  |||||||||||||||||||| ||| || || |||   | || || ||||| |||||||| ||    
T  39414732 tcaactcagactccttccggtgtccatcaaatttttccagctttgactcaggatccttaacttgtccttcaaactgtttctcatttaacttgagctcttt 39414831  T
Q  106 caccagtactttgaacttattctcttttgacttgagttctttccattgttcttcaaatttcttctcgtttaatttgaagtccgtaacctgacctttg 202  Q
     ||||||| ||||||||||||||| |||| |||||||||||||||| |||||||||||| |||||| ||| ||||||  ||| |||| |||||||||    
T  39414832 gaccagtagtttgaacttattctcatttgtcttgagttctttccatcgttcttcaaattgcttctcttttgatttgagttccttaacttgacctttg 39414928  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 39473354 - 39473522
Alignment:
Q  1 ctctgtcaactcaggctccttcagttgttcatctaacttatttagctttgactcaggatccttgactagtgctccaattcgcttgtcttttaatttgagc 100  Q
    |||||||||||||||||||||| ||  | ||||    ||||||||||||||||| ||||||| ||||  | || |||   |||| |||||||| |||||     
T  39473354 ctctgtcaactcaggctccttcggtgttccatcatgtttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagt 39473453  T
Q  101 tcattcaccagtactttgaacttattctcttttgacttgagttctttccattgttcttcaaatttcttc 169  Q
       ||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||    
T  39473454 gacttcactagtactttgaacttattctcttttgactcgagttctttccatcgttcttcaaattgcttc 39473522  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 39137895 - 39137800
Alignment:
Q  86 tcttttaatttgagctcattcaccagtactttgaacttattctcttttgacttgagttctttccattgttcttcaaatttcttctcgtttaatttg 181  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||||| ||||||||||||  ||||||||| || |||||| ||| |||||    
T  39137895 tcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccaccgttcttcaatttgcttctcttttgatttg 39137800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 170
Target Start/End: Original strand, 39381458 - 39381625
Alignment:
Q  3 ctgtcaactcaggctccttcagttgttcatctaacttatttagctttgactcaggatccttgactagtgctccaattcgcttgtcttttaatttgagctc 102  Q
    ||||||| | |||||| |||| |||| |||| || |||||||||||||| |||||||||||| || ||  | |||   |||| |||||||| ||||||||    
T  39381458 ctgtcaatttaggctctttcatttgtccatccaatttatttagctttgaatcaggatccttgtcttgtctttcaaactgcttctcttttaacttgagctc 39381557  T
Q  103 attcaccagtactttgaacttattctcttttgacttgagttctttccattgttcttcaaatttcttct 170  Q
    ||||| |  ||||||||||| |||||||||||| | | ||||||||  | ||||||||||||||||||    
T  39381558 attcatctttactttgaactcattctcttttgattcgtgttctttcattcgttcttcaaatttcttct 39381625  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 39192432 - 39192567
Alignment:
Q  48 ttgactcaggatccttgactagtgctccaattcgcttgtcttttaatttgagctcattcaccagtactttgaacttattctcttttgacttgagttcttt 147  Q
    ||||| ||||||||||||||||| || |||   |||| |||||||| |||||||| ||||||  | ||||||||||||||||||||||||  |||||  |    
T  39192432 ttgacgcaggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcact 39192531  T
Q  148 ccattgttcttcaaatttcttctcgtttaatttgaa 183  Q
    |||| || |||| |||| |||||| ||| |||||||    
T  39192532 ccatcgtccttctaattgcttctcttttgatttgaa 39192567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 39198112 - 39198247
Alignment:
Q  48 ttgactcaggatccttgactagtgctccaattcgcttgtcttttaatttgagctcattcaccagtactttgaacttattctcttttgacttgagttcttt 147  Q
    ||||| ||||||||||||||||| || |||   |||| |||||||| |||||||| ||||||  | ||||||||||||||||||||||||  |||||  |    
T  39198112 ttgacgcaggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcact 39198211  T
Q  148 ccattgttcttcaaatttcttctcgtttaatttgaa 183  Q
    |||| || |||| |||| |||||| ||| |||||||    
T  39198212 ccatcgtccttctaattgcttctcttttgatttgaa 39198247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 39215685 - 39215560
Alignment:
Q  46 ctttgactcaggatccttgactagtgctccaattcgcttgtcttttaatttgagctcattcaccagtactttgaacttattctcttttgacttgagttct 145  Q
    |||| ||| ||||||||||||| || ||||||   |||| |||||||| |||| ||| || ||| ||||||||||||||||||||||| |||  ||||||    
T  39215685 ctttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttct 39215586  T
Q  146 ttccattgttcttcaaatttcttctc 171  Q
    |||||  || ||||||||| ||||||    
T  39215585 ttccaccgtccttcaaattgcttctc 39215560  T

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Target: chr2; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 183
Target Start/End: Original strand, 39397796 - 39397976
Alignment:
Q  3 ctgtcaactcaggctccttcagttgttcatctaacttatttagctttgactcaggatccttgactagtgctccaattcgcttgtcttttaatttgagctc 102  Q
    |||||||||||||||||||||||||| |||| || ||||  ||| |||||||| | ||||||||| |  || |||   |||| |||||||| |  |||||    
T  39397796 ctgtcaactcaggctccttcagttgtccatcaaatttatccagccttgactcaagttccttgactcgacctgcaacctgcttctcttttaactcaagctc 39397895  T
Q  103 attcaccagtactttgaacttattctcttttgacttgagttctttccattgttcttcaaatttcttctcgtttaatttgaa 183  Q
     | ||||  ||||||||||| ||||||||||||||  |||| ||||||  ||||||||| || ||| || ||| |||||||    
T  39397896 ctgcacctttactttgaactgattctcttttgactcaagttttttccaccgttcttcaatttgcttatcttttgatttgaa 39397976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 39161932 - 39161754
Alignment:
Q  9 actcaggctccttcagttgttcatctaacttatttagctttgactcaggatccttgactagtgctccaattcgcttgtcttttaatttgagctcattcac 108  Q
    ||||||||||||| |||||| |||| || ||||| | |||||||| ||||||||||||| || || ||| | |||| |||||||| |||||||| ||| |    
T  39161932 actcaggctcctttagttgtccatcaaatttattcatctttgacttaggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctc 39161833  T
Q  109 cagtactttgaacttattctcttttgacttgagttctttccattgttcttcaaatttcttctcgtttaatttgaagtcc 187  Q
       |||||||| ||||| |||||| | ||  ||||| |||||  || |||||||||  ||||  ||| |||||||||||    
T  39161832 atttactttgagcttatactctttcgtctccagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcc 39161754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 39207262 - 39207440
Alignment:
Q  9 actcaggctccttcagttgttcatctaacttatttagctttgactcaggatccttgactagtgctccaattcgcttgtcttttaatttgagctcattcac 108  Q
    ||||||||||||| |||||| |||| || ||||| | |||||||| ||||||||||||| || || ||| | |||| |||||||| |||||||| ||| |    
T  39207262 actcaggctcctttagttgtccatcaaatttattcatctttgacttaggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctc 39207361  T
Q  109 cagtactttgaacttattctcttttgacttgagttctttccattgttcttcaaatttcttctcgtttaatttgaagtcc 187  Q
       |||||||| ||||| |||||| | ||  ||||| |||||  || |||||||||  ||||  ||| |||||||||||    
T  39207362 atttactttgagcttatactctttcgtctccagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcc 39207440  T

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Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 39370203 - 39370022
Alignment:
Q  4 tgtcaactcaggctccttcagttgttcatctaacttatttagctttgactcaggatccttgactagtgctccaattcgcttgtcttttaatttgagctca 103  Q
    |||| ||||||||| ||| |||||| |||| || ||||| | |||||||||| || |||||||| ||  |||||   |||| |||||||||| || |||     
T  39370203 tgtcgactcaggcttctttagttgtccatccaatttattcatctttgactcaagacccttgacttgtcttccaaactgcttctcttttaattcgaactcc 39370104  T
Q  104 ttcaccagtactttgaacttattctcttttgacttgagttctttccattgttcttcaaatttcttctcgtttaatttgaagt 185  Q
    |||||| | ||| ||||||| ||||||||| |||  |||||||||||  || ||||||||| ||| || ||  |||||||||    
T  39370103 ttcacctgcactatgaacttgttctcttttaactcaagttctttccaccgtccttcaaattgcttttctttcgatttgaagt 39370022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 180
Target Start/End: Complemental strand, 39222936 - 39222804
Alignment:
Q  48 ttgactcaggatccttgactagtgctccaattcgcttgtcttttaatttgagctcattcaccagtactttgaacttattctcttttgacttgagttcttt 147  Q
    ||||| |||||||||||||| || || |||  | ||| ||||| || |||||||| ||||||  | |||||||||||||||||| |||||  ||||  ||    
T  39222936 ttgacacaggatccttgacttgtccttcaaaccacttttctttgaagttgagctccttcacctttgctttgaacttattctcttctgactcaagtttatt 39222837  T
Q  148 ccattgttcttcaaatttcttctcgtttaattt 180  Q
    |||| |||||||||||| |||||| ||| ||||    
T  39222836 ccatcgttcttcaaattgcttctcttttgattt 39222804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 39389090 - 39389213
Alignment:
Q  9 actcaggctccttcagttgttcatctaacttatttagctttgactcaggatccttgactagtgctccaattcgcttgtcttttaatttgagctcattcac 108  Q
    |||| |||||||| | |||| |||| || ||||| ||||||||||||||||| |||||| |  || |||   |||| |||||||| |||||||| |||||    
T  39389090 actcgggctcctttatttgtccatcaaatttattcagctttgactcaggatcgttgacttgcccttcaaactgcttttcttttaagttgagctccttcac 39389189  T
Q  109 cagtactttgaacttattctcttt 132  Q
    |  |||||||||||||| ||||||    
T  39389190 ctttactttgaacttatactcttt 39389213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 183
Target Start/End: Complemental strand, 39468432 - 39468255
Alignment:
Q  6 tcaactcaggctccttcagttgttcatctaacttatttagctttgactcaggatccttgactagtgctccaattcgcttgtcttttaatttgagctcatt 105  Q
    |||||||||||||||||  |||| | || |||||| |   |||||||| | | ||||||||| || || ||||  |||| |||||||| |||| ||| ||    
T  39468432 tcaactcaggctccttcgcttgtccgtcaaacttaatcgactttgactgaagttccttgacttgtccttcaatctgcttctcttttaacttgaactcctt 39468333  T
Q  106 caccagtactttgaacttattctcttttgacttgagttctttccattgttcttcaaatttcttctcgtttaatttgaa 183  Q
    ||||  ||||||||||  ||||||||||||||| | |||||| ||  |||| ||||||| ||| || ||| |||||||    
T  39468332 cacctttactttgaaccgattctcttttgacttcaattctttacaccgttcatcaaattgcttatcttttgatttgaa 39468255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 39152561 - 39152496
Alignment:
Q  122 ttattctcttttgacttgagttctttccattgttcttcaaatttcttctcgtttaatttgaagtcc 187  Q
    |||||||||||||||| ||| ||||||||  ||| |||||||| |||||| |||  ||||||||||    
T  39152561 ttattctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcc 39152496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 3 - 183
Target Start/End: Complemental strand, 16113395 - 16113215
Alignment:
Q  3 ctgtcaactcaggctccttcagttgttcatctaacttatttagctttgactcaggatccttgactagtgctccaattcgcttgtcttttaatttgagctc 102  Q
    |||| ||||||||||||||||||||| |  | || |  || |||||||||||| | ||||||||| || || ||||  |||| |||||||| ||||||||    
T  16113395 ctgttaactcaggctccttcagttgtccgccaaattcgttcagctttgactcaagctccttgacttgtacttcaatctgcttctcttttaacttgagctc 16113296  T
Q  103 attcaccagtactttgaacttattctcttttgacttgagttctttccattgttcttcaaatttcttctcgtttaatttgaa 183  Q
     ||| ||  ||||||||||| |||||||||||| | ||||||||||||  |||||||||||| ||| |||||| |||||||    
T  16113295 cttctcctttactttgaactgattctcttttgattcgagttctttccaccgttcttcaaattgcttatcgtttgatttgaa 16113215  T

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Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 19807845 - 19807781
Alignment:
Q  86 tcttttaatttgagctcattcaccagtactttgaacttattctcttttgacttgagttctttcca 150  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||||| ||||||||||||    
T  19807845 tcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttcca 19807781  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 19807918 - 19807854
Alignment:
Q  1 ctctgtcaactcaggctccttcagttgttcatctaacttatttagctttgactcaggatccttga 65  Q
    |||||||||||||| |||||||| |||| |||| || ||||  ||||||||  ||||||||||||    
T  19807918 ctctgtcaactcagactccttcaattgtccatcaaatttatccagctttgaaccaggatccttga 19807854  T

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