View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3097_low_10 (Length: 499)
Name: NF3097_low_10
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_10 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 20 - 476
Target Start/End: Complemental strand, 11902263 - 11901807
Alignment:
| Q |
20 |
attaagatggttccaacatctattgaggaggtgaagtacttgaggtatctagatctttcccataacaacatagaaaagctacctagttccatcacaaagc |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
11902263 |
attaagatggttccaacatctattgaggaggtgaagtacttgaggtatctagatctttctcataacaacatagaaaagctacctagttccatcactaagc |
11902164 |
T |
|
| Q |
120 |
ttatccacttgcaaacattgaaattatcacaatgtcacatcctcaaggaattgccaaaagacttggatggcctgagttgcctcaaccatcttgacattga |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902163 |
ttatccacttgcaaacattgaaattatcacaatgtcacatcctcaaggaattgccaaaagacttggatggcctgagttgcctcaaccatcttgacattga |
11902064 |
T |
|
| Q |
220 |
gggatgcctggatctaactcacatgccaagtggtataaataagctcacttctttacaaacattgccactctttgtggccagcaagaaacaagtaatcact |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11902063 |
gggatgcctggatctaactcacatgccaagtggtataaataagctcacttctttacaaacattgtcactctttgtggccagcaagaaacaagtaatcact |
11901964 |
T |
|
| Q |
320 |
ggaggactaagagaactcacggatcttaacaatctgagaggccagttagaaatatcgcatctagaacaagtcatgttctctccatctaaggaagctgctc |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11901963 |
ggaggactaagagaactcacggatcttaacaatctgagaggccggttggaaatatcgcatctagaacaagtcatgttctctccatctaaggaagctgctc |
11901864 |
T |
|
| Q |
420 |
aagatgaatttctgaaaaataaacaacaccttgagtttttgactctaagatgggatc |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11901863 |
aagatgaatttctgaaaaataaacaacaccttgagtttttgactctaagatgggatc |
11901807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 38 - 476
Target Start/End: Original strand, 11860312 - 11860747
Alignment:
| Q |
38 |
tctattgaggaggtgaagtacttgaggtatctagatctttcccataacaacatagaaaagctacctagttccatcacaaagcttatccacttgcaaacat |
137 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||| ||||||||||||||||||| |
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|
| T |
11860312 |
tctattgaggatgtgaagtacttgaggtatctagatctttcccataacaacatagagaagcttcctagttgcataacaaatcttatccacttgcaaacat |
11860411 |
T |
|
| Q |
138 |
tgaaattatcacaatgtcacatcctcaaggaattgccaaaagacttggatggcctgagttgcctcaaccatcttgacattgagggatgcctggatctaac |
237 |
Q |
| |
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||||| | || |||||||| ||||||||||||||||||||||| |||| | ||||||||||||| ||||||||| | ||||||||| |||||||||| |
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|
| T |
11860412 |
tgaaactgtctcaatgtcatgtcctcaaggaattgccaaaagacatggacgatttgagttgcctcaatcatcttgacttagagggatgcttggatctaac |
11860511 |
T |
|
| Q |
238 |
tcacatgccaagtggtataaataagctcacttctttacaaacattgccactctttgtggccagcaagaaacaagtaatcactggaggactaagagaactc |
337 |
Q |
| |
|
||| ||||||||||| ||||||||||| |||||||| ||||||||| |||| || || |||||||||||||||| |||| |||||||||||| |||| |
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| T |
11860512 |
tcaaatgccaagtgggataaataagcttacttctttgcaaacattgtcacttttcgtagccagcaagaaacaag---tcacgggaggactaagatcactc |
11860608 |
T |
|
| Q |
338 |
acggatcttaacaatctgagaggccagttagaaatatcgcatctagaacaagtcatgttctctccatctaaggaagctgctcaagatgaatttctgaaaa |
437 |
Q |
| |
|
|| ||||||||||||||||||||||| || ||||| || ||||| |||||||||| |||||||||||| |||||||||||| ||||||| ||| |||||| |
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|
| T |
11860609 |
acagatcttaacaatctgagaggccacttggaaatttctcatcttgaacaagtcaagttctctccatcaaaggaagctgctaaagatgattttttgaaaa |
11860708 |
T |
|
| Q |
438 |
ataaacaacaccttgagtttttgactctaagatgggatc |
476 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
11860709 |
ataagcaacacctcgagttcttgactctaagatgggatc |
11860747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 29 - 476
Target Start/End: Original strand, 11828168 - 11828612
Alignment:
| Q |
29 |
gttccaacatctattgaggaggtgaagtacttgaggtatctagatctttcccataacaacatagaaaagctacctagttccatcacaaagcttatccact |
128 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||| ||| ||||| |||||||||| |
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|
| T |
11828168 |
gttccaagctctattgaggatgtgaagtacttgaggtatctagatctttcacataacaacatggagaagcttcctagttgcataacaaatcttatccact |
11828267 |
T |
|
| Q |
129 |
tgcaaacattgaaattatcacaatgtcacatcctcaaggaattgccaaaagacttggatggcctgagttgcctcaaccatcttgacattgagggatgcct |
228 |
Q |
| |
|
||||||| |||||| | || | |||||| ||||||| ||||||||||||||| |||||| |||||||||| |||||||||||| | || |||||| | |
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|
| T |
11828268 |
tgcaaacgttgaaactgtctcgatgtcatgtcctcaaagaattgccaaaagacatggatgatttgagttgccttaaccatcttgacttagatggatgctt |
11828367 |
T |
|
| Q |
229 |
ggatctaactcacatgccaagtggtataaataagctcacttctttacaaacattgccactctttgtggccagcaagaaacaagtaatcactggaggacta |
328 |
Q |
| |
|
|||||||||||| ||||||||||| |||| ||||||||||||||| ||||||||| |||| || || |||||||||||||||| |||| ||||||||| |
|
|
| T |
11828368 |
ggatctaactcaaatgccaagtggaataagtaagctcacttctttgcaaacattgtcacttttcgtagccagcaagaaacaag---tcacgggaggacta |
11828464 |
T |
|
| Q |
329 |
agagaactcacggatcttaacaatctgagaggccagttagaaatatcgcatctagaacaagtcatgttctctccatctaaggaagctgctcaagatgaat |
428 |
Q |
| |
|
||| |||||| ||||||||||||||||| ||||| || ||||| |||||| |||||| ||| |||||||||||| || ||||||||| ||||||| | |
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|
| T |
11828465 |
agatcactcacagatcttaacaatctgaggggccacttggaaattatgcatctggaacaaatcaagttctctccatcaaaagaagctgctaaagatgatt |
11828564 |
T |
|
| Q |
429 |
ttctgaaaaataaacaacaccttgagtttttgactctaagatgggatc |
476 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11828565 |
ttttgaaaaataaacaacaccttgagttcttgactctaagatgggatc |
11828612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 38 - 476
Target Start/End: Original strand, 12039077 - 12039512
Alignment:
| Q |
38 |
tctattgaggaggtgaagtacttgaggtatctagatctttcccataacaacatagaaaagctacctagttccatcacaaagcttatccacttgcaaacat |
137 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||| ||||||||||||||||| | |
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|
| T |
12039077 |
tctattgaagaggtgaagtacttgaggtatctagatctttctcataacaacatagagaagcttcctagttgcatcacaactcttatccacttgcaaacgt |
12039176 |
T |
|
| Q |
138 |
tgaaattatcacaatgtcacatcctcaaggaattgccaaaagacttggatggcctgagttgcctcaaccatcttgacattgagggatgcctggatctaac |
237 |
Q |
| |
|
||||| | || |||||||| | ||||||||||||||||||||| |||||| ||||||||||||||||||||||| | ||||||||| |||||||||| |
|
|
| T |
12039177 |
tgaaactttctcaatgtcattttctcaaggaattgccaaaagacatggatgatttgagttgcctcaaccatcttgacttagagggatgcttggatctaac |
12039276 |
T |
|
| Q |
238 |
tcacatgccaagtggtataaataagctcacttctttacaaacattgccactctttgtggccagcaagaaacaagtaatcactggaggactaagagaactc |
337 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| || ||||||||| | | | || |||||||||||||||||| |
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|
| T |
12039277 |
tcaaatgccaagtgggataaataagctcacttctttacaaacattgtcactctttgtagctagcaagaaatacg---ttacaggaggactaagagaactc |
12039373 |
T |
|
| Q |
338 |
acggatcttaacaatctgagaggccagttagaaatatcgcatctagaacaagtcatgttctctccatctaaggaagctgctcaagatgaatttctgaaaa |
437 |
Q |
| |
|
|| ||||| ||||| |||||||| || | ||||| |||||||| |||||||||| |||||| | ||| |||||| |||| ||||||||||| |||||| |
|
|
| T |
12039374 |
accgatctcaacaaactgagaggtcacatggaaatttcgcatctggaacaagtcaagttctcgcaatccaaggaaattgctaaagatgaatttttgaaaa |
12039473 |
T |
|
| Q |
438 |
ataaacaacaccttgagtttttgactctaagatgggatc |
476 |
Q |
| |
|
| ||| || |||||| ||| ||||||||||||||||||| |
|
|
| T |
12039474 |
acaaaaaataccttgggttcttgactctaagatgggatc |
12039512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 23 - 474
Target Start/End: Original strand, 11731942 - 11732393
Alignment:
| Q |
23 |
aagatggttccaacatctattgaggaggtgaagtacttgaggtatctagatctttcccataacaacatagaaaagctacctagttccatcacaaagctta |
122 |
Q |
| |
|
||||| || ||||| |||||||||||| |||| |||||||||| ||||||||| ||||| ||||||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
11731942 |
aagattgtaccaacctctattgaggagatgaaatacttgaggtttctagatctatcccacaacaacatagagaagcttcctagttgcatcacaaagctta |
11732041 |
T |
|
| Q |
123 |
tccacttgcaaacattgaaattatcacaatgtcacatcctcaaggaattgccaaaagacttggatggcctgagttgcctcaaccatcttgacattgaggg |
222 |
Q |
| |
|
|||| |||||||| |||||| | || | ||||| |||||||||||||||||||||||||| | | |||| | |||||| ||||||| |||||||||| |
|
|
| T |
11732042 |
tccatttgcaaaccttgaaactctcctactgtcatgtcctcaaggaattgccaaaagacttgaaggatctgactcgcctcagccatcttaacattgaggg |
11732141 |
T |
|
| Q |
223 |
atgcctggatctaactcacatgccaagtggtataaataagctcacttctttacaaacattgccactctttgtggccagcaagaaacaagtaatcactgga |
322 |
Q |
| |
|
||| ||||||||||||||||||||| || ||| |||| |||||||| |||||||||||| |||| || ||||||||||||||||| | ||| ||| |
|
|
| T |
11732142 |
ttgcttggatctaactcacatgccaaccgggatagataaactcacttccttacaaacattgtcacttttcgtggccagcaagaaacatgctgacaccgga |
11732241 |
T |
|
| Q |
323 |
ggactaagagaactcacggatcttaacaatctgagaggccagttagaaatatcgcatctagaacaagtcatgttctctccatctaaggaagctgctcaag |
422 |
Q |
| |
|
|||||||| |||||||| |||| ||||| || | | | | | ||||| | |||||| || ||||||| |||||||||||| || ||||| ||| ||| |
|
|
| T |
11732242 |
ggactaagggaactcacaaatctcaacaacctcaaggacaaactggaaattttgcatctggagcaagtcaagttctctccatccaacgaagcggctaaag |
11732341 |
T |
|
| Q |
423 |
atgaatttctgaaaaataaacaacaccttgagtttttgactctaagatggga |
474 |
Q |
| |
|
|||||||| ||||||||||||||||| || || |||||||||||||||||| |
|
|
| T |
11732342 |
atgaatttgtgaaaaataaacaacacattcagcatttgactctaagatggga |
11732393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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