View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3097_low_100 (Length: 235)

Name: NF3097_low_100
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3097_low_100
NF3097_low_100
[»] chr6 (3 HSPs)
chr6 (20-216)||(10381707-10381903)
chr6 (144-216)||(10408335-10408407)
chr6 (54-123)||(10408421-10408491)
[»] chr7 (2 HSPs)
chr7 (150-213)||(32714199-32714262)
chr7 (150-213)||(32717387-32717450)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 10381707 - 10381903
Alignment:
Q  20 taaataagtaaaaataaaatcacatagtgttcggtagcgcctcaaataa----gagcacctcaacatagaaagctataaaaataattgttataataacat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  10381707 taaataagtaaaaataaaatcacatagtgttcggtagcgcctcaaataattaagagcacctcaacatagaaagctataaaaataaatgttataataacat 10381806  T
Q  116 ttcttgaattnnnnnnnnnnnnnnnnnntagcataccagtggatttatcaagattaagcagaatctcagaaccaccatttaagtatttgatatgatcata 215  Q
    ||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10381807 ttcttgaatt----gaaaaaaaataaaatagcataccagtggatttatcaagattaagcagaatctcagaaccaccatttaagtatttgatatgatcata 10381902  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 10408407 - 10408335
Alignment:
Q  144 tagcataccagtggatttatcaagattaagcagaatctcagaaccaccatttaagtatttgatatgatcataa 216  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10408407 tagcataccagtggacttatcaagattaagcagaatttcagaaccaccatttaagtatttgatatgatcataa 10408335  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 10408491 - 10408421
Alignment:
Q  54 tagcgcctcaaataagagcacctcaacatagaaagctata-aaaataattgttataataacatttcttgaa 123  Q
    ||||||||||||||||||||||||||||||  || ||||| ||||  |||||| |||||| ||||||||||    
T  10408491 tagcgcctcaaataagagcacctcaacataagaacctatacaaaaatattgttctaataaaatttcttgaa 10408421  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 32714262 - 32714199
Alignment:
Q  150 accagtggatttatcaagattaagcagaatctcagaaccaccatttaagtatttgatatgatca 213  Q
    ||||||| |||||||||||| |||  ||||||||||||||||||| ||||||||||||||||||    
T  32714262 accagtgtatttatcaagatgaagttgaatctcagaaccaccattgaagtatttgatatgatca 32714199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 32717450 - 32717387
Alignment:
Q  150 accagtggatttatcaagattaagcagaatctcagaaccaccatttaagtatttgatatgatca 213  Q
    ||||||| | || ||||||| |||  ||||||||||||||||||| ||||||||||||||||||    
T  32717450 accagtgtacttgtcaagatgaagttgaatctcagaaccaccattgaagtatttgatatgatca 32717387  T

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