View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_103 (Length: 227)
Name: NF3097_low_103
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_103 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 41080247 - 41080042
Alignment:
| Q |
1 |
acccattgacaaaagcactacctaaaatcccttttcagcatctcatttcctagttggggatattgaacatatatcttccaacttaagaggggatatttaa |
100 |
Q |
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| T |
41080247 |
acccattgacaaaagcactacctaaaatcccttttcagcatctcatttcctagttggggatattgaacatatatcttccaacttaagaggggatatttaa |
41080148 |
T |
|
| Q |
101 |
tataacatatttgttgcatttatgttccaactgttttatatagttagtttaatttcaggttcaggtactacttgtcatataaaagaaacatatagacctc |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41080147 |
tataacatatttgttgcatttatgttctaactgttttatatagttagtttaatttcaggttcaggtactacttgtcatataaaagaaacatatagacctc |
41080048 |
T |
|
| Q |
201 |
ttgatg |
206 |
Q |
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|||||| |
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| T |
41080047 |
ttgatg |
41080042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 41091597 - 41091445
Alignment:
| Q |
1 |
acccattgacaaaagcactacctaaaatcccttttcagcatctcatttcctagttggggatattgaacatatatcttccaacttaaga-ggggatattta |
99 |
Q |
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||||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||| | ||||||||||||||||||| ||| ||||||||| | |
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| T |
41091597 |
acccattgaaaaaagcactacctaaaatccctattctgcatctcatttccaagttggggatttcaaacatatatcttccaacttgagagggggatattga |
41091498 |
T |
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| Q |
100 |
atataacatatttgttgcatttatgttccaactgttttatatagttagtttaatt |
154 |
Q |
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|||||||| |||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
41091497 |
atataacaaatttgttgcatttatgttatcactgttt--tatagttagtttaatt |
41091445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 41101699 - 41101559
Alignment:
| Q |
1 |
acccattgacaaaagcactacctaaaatcccttttcagcatctcatttcctagttggggatattgaaca-tatatcttccaacttaagagg-ggatattt |
98 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||| |||| |||||||||| ||||| ||||||| |
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| T |
41101699 |
acccattgaaaaaagcactacc-aaaatcccttttcagcatctcatttccaagttggagatattgaacattataccttccaacttgagaggaggatattg |
41101601 |
T |
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| Q |
99 |
aatataacatatttgttgcatttatgttccaactgttttata |
140 |
Q |
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||||||||| |||| ||||||||||||| ||||||||||| |
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| T |
41101600 |
aatataacaaatttcttgcatttatgttattactgttttata |
41101559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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