View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_105 (Length: 226)
Name: NF3097_low_105
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_105 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 50 - 219
Target Start/End: Complemental strand, 35593006 - 35592835
Alignment:
| Q |
50 |
attcaatgtatattttatatatatggtgtcggattcggtgttaacttttgtgtctaaataatctagctctatt--atagtataagcatcacgatccaata |
147 |
Q |
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| T |
35593006 |
attcaatgtatattttatatatacggtgtcggatacggtgttaacttttgtgtctaaataatctagttctattttatagtataagcatcacgatccaata |
35592907 |
T |
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| Q |
148 |
aatattaggtcaaatatgacatagtgattgttcaaccctaggataaccgtgtatattcaaaaatgatgatgt |
219 |
Q |
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| T |
35592906 |
aatattaggtcaaatatgacatagtgattgttcaaccctaggataaccgtgtatattcaaaaacgatgatgt |
35592835 |
T |
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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 51938 - 51906
Alignment:
| Q |
20 |
tcgatgacctagccgagttttaaaactatgatt |
52 |
Q |
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| T |
51938 |
tcgatgaccgagccgagttttaaaactatgatt |
51906 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 18656698 - 18656730
Alignment:
| Q |
20 |
tcgatgacctagccgagttttaaaactatgatt |
52 |
Q |
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| T |
18656698 |
tcgatgaccgagccgagttttaaaactatgatt |
18656730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 19726787 - 19726819
Alignment:
| Q |
20 |
tcgatgacctagccgagttttaaaactatgatt |
52 |
Q |
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| T |
19726787 |
tcgatgaccgagccgagttttaaaactatgatt |
19726819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 55675449 - 55675417
Alignment:
| Q |
20 |
tcgatgacctagccgagttttaaaactatgatt |
52 |
Q |
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| T |
55675449 |
tcgatgaccgagccgagttttaaaactatgatt |
55675417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 26725582 - 26725550
Alignment:
| Q |
19 |
atcgatgacctagccgagttttaaaactatgat |
51 |
Q |
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| T |
26725582 |
atcgatgaccgagccgagttttaaaactatgat |
26725550 |
T |
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