View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_106 (Length: 222)
Name: NF3097_low_106
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_106 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 781609 - 781401
Alignment:
| Q |
14 |
ttacgcaggaacacataaaacttggtttgattccatggagaattatctttttcttactgttactcaaagcatcattnnnnnnnctcaaaaatatgttcaa |
113 |
Q |
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| T |
781609 |
ttacgcatgaacacataaaacttagtttgattccatggagaattatctttttcttaatgttactgaaagcatcataaaaaaaactcaaaaatatgttcaa |
781510 |
T |
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| Q |
114 |
gtcaatgtgatttcaccaaacataaacatcgatgtttgcactagaactatgtcaaaacataagcactaaatattatcactaaatgatcccaaaatgtatt |
213 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
781509 |
gtcaatgtgatttctccaaacataaacatcgatgtttgcactagaactatgtcaaaacataagcactaaatattatcactaaatgatcccataatgtatt |
781410 |
T |
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| Q |
214 |
tcaaaagag |
222 |
Q |
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||||||||| |
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| T |
781409 |
tcaaaagag |
781401 |
T |
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