View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_110 (Length: 213)
Name: NF3097_low_110
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_110 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 10970945 - 10971162
Alignment:
| Q |
1 |
cacaaacacacagactacagaattattgacgaacaacttcgtagcatagcaccgacacttctgattgaaggcgtatctggtgtac--------------a |
86 |
Q |
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| T |
10970945 |
cacaaacacacagactacagaattattgacgaacaacttcgtagcatagcaccgacacttctgattgaaggcgtatctggtgtacgtgttagtgtccaca |
10971044 |
T |
|
| Q |
87 |
tcaaacggcaccgacacattgaatttatcgtttcctcgactatcattggtgttaaagtgtcagtgtccggtttccatcatataaattaaacggtaagcag |
186 |
Q |
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| T |
10971045 |
tcaaacggcaccgacacattgaatttatcgtttcctcgactattatcggtgttaaagtgtcagtgtccggtttccatcatataaattaaacggtaagcag |
10971144 |
T |
|
| Q |
187 |
taacacagaataattgtt |
204 |
Q |
| |
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|||||||||||||||||| |
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| T |
10971145 |
taacacagaataattgtt |
10971162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 29647438 - 29647400
Alignment:
| Q |
45 |
catagcaccgacacttctgattgaaggcgtatctggtgt |
83 |
Q |
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|||||||||||||||||||||||||| ||| |||||||| |
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| T |
29647438 |
catagcaccgacacttctgattgaagacgtgtctggtgt |
29647400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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