View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3097_low_116 (Length: 201)

Name: NF3097_low_116
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3097_low_116
NF3097_low_116
[»] chr3 (15 HSPs)
chr3 (7-187)||(6838843-6839023)
chr3 (31-187)||(8471468-8471624)
chr3 (7-148)||(5268002-5268143)
chr3 (7-148)||(5298677-5298818)
chr3 (7-148)||(4388885-4389026)
chr3 (29-143)||(8589677-8589791)
chr3 (30-121)||(8568913-8569004)
chr3 (7-122)||(5250141-5250256)
chr3 (29-176)||(6735905-6736052)
chr3 (7-96)||(5280679-5280768)
chr3 (40-147)||(6947213-6947320)
chr3 (45-110)||(7587856-7587921)
chr3 (7-132)||(6882491-6882616)
chr3 (30-147)||(8454598-8454715)
chr3 (40-176)||(6479960-6480096)
[»] chr4 (1 HSPs)
chr4 (7-148)||(25242099-25242243)
[»] chr7 (1 HSPs)
chr7 (43-121)||(6573276-6573354)
[»] scaffold0425 (1 HSPs)
scaffold0425 (29-102)||(7444-7517)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 6e-67; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 6838843 - 6839023
Alignment:
Q  7 gcttttcacggcagaaatgtaagtgaatacccgaaacttgaatcaattggcaaaaatattgtagataagtgtggagggttgcctttagctgtaaaaacaa 106  Q
    ||||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||     
T  6838843 gcttttcacggcaaaaatgcaagcgaatacccaaaacttgaatcaattggcaaaaagattgtagataagtgtggagggttgcctttagctgtgaaaacat 6838942  T
Q  107 tgggcaacctcttgcgtaaaaaattcactcaacatgaatgggaaaagatactagaggctgacatgtggcggttaactgatg 187  Q
    |||| ||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  6838943 tggggaacctcttgcggaaaaaattctctaaacatgaatgggaaaagatactagaggctgacatgtggcgcttagctgatg 6839023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 8471624 - 8471468
Alignment:
Q  31 gaatacccgaaacttgaatcaattggcaaaaatattgtagataagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgcgtaaaaaat 130  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| ||||| ||||| |||||||    
T  8471624 gaatacccaaatcttgaatcaattggcaaaaatattgtagataagtgtggagggctgcctttagctgtgaaaacattgggaaaccttttgcggaaaaaat 8471525  T
Q  131 tcactcaacatgaatgggaaaagatactagaggctgacatgtggcggttaactgatg 187  Q
       ||||||| |||||||| |||||||||||||||||||||||||||||| ||||||    
T  8471524 attctcaacacgaatgggataagatactagaggctgacatgtggcggttagctgatg 8471468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 5268143 - 5268002
Alignment:
Q  7 gcttttcacggcagaaatgtaagtgaatacccgaaacttgaatcaattggcaaaaatattgtagataagtgtggagggttgcctttagctgtaaaaacaa 106  Q
    |||||||| || || |||| |||||||||||| || |||||||||||||| || || || |||||||||||||||||||| |||||||||||||||||      
T  5268143 gcttttcatggaagcaatgcaagtgaatacccaaatcttgaatcaattggaaagaaaatagtagataagtgtggagggttacctttagctgtaaaaactt 5268044  T
Q  107 tgggcaacctcttgcgtaaaaaattcactcaacatgaatggg 148  Q
    |||| || |||||||| | ||||||| |||||||||||||||    
T  5268043 tgggaaatctcttgcgaagaaaattctctcaacatgaatggg 5268002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 5298818 - 5298677
Alignment:
Q  7 gcttttcacggcagaaatgtaagtgaatacccgaaacttgaatcaattggcaaaaatattgtagataagtgtggagggttgcctttagctgtaaaaacaa 106  Q
    ||||||||||||| ||||| ||||||||| || || ||||||||||||||||| || || ||||| |||||||||||||||||| ||||||||||| ||     
T  5298818 gcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggagggttgcctctagctgtaaaagcat 5298719  T
Q  107 tgggcaacctcttgcgtaaaaaattcactcaacatgaatggg 148  Q
    |||| || |||||||| | ||||||| |||||| ||||||||    
T  5298718 tggggaatctcttgcgaagaaaattctctcaacgtgaatggg 5298677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 4388885 - 4389026
Alignment:
Q  7 gcttttcacggcagaaatgtaagtgaatacccgaaacttgaatcaattggcaaaaatattgtagataagtgtggagggttgcctttagctgtaaaaacaa 106  Q
    ||||||||||| || |||| |||||| || || || |||| |||||||||||| || |||||||||||||||| |||||| || ||||||||||||||      
T  4388885 gcttttcacggaaggaatgcaagtgagtatccaaatcttgtatcaattggcaagaaaattgtagataagtgtgtagggtttccattagctgtaaaaacgt 4388984  T
Q  107 tgggcaacctcttgcgtaaaaaattcactcaacatgaatggg 148  Q
    |||| || |||||||| | ||||||| |||||| ||||||||    
T  4388985 tgggaaatctcttgcgaagaaaattctctcaacgtgaatggg 4389026  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 8589791 - 8589677
Alignment:
Q  29 gtgaatacccgaaacttgaatcaattggcaaaaatattgtagataagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgcgtaaaaa 128  Q
    ||||||| || || |||||||||| |||||| || ||  | ||||||||||||||||||||||||||||||||| |||||||| | |||||||| | |||    
T  8589791 gtgaatatccaaatcttgaatcaactggcaagaaaatactggataagtgtggagggttgcctttagctgtaaaatcaatgggccaactcttgcgaagaaa 8589692  T
Q  129 attcactcaacatga 143  Q
     ||  ||||||||||    
T  8589691 tttttctcaacatga 8589677  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 8568913 - 8569004
Alignment:
Q  30 tgaatacccgaaacttgaatcaattggcaaaaatattgtagataagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgc 121  Q
    |||||| || || |||||||| ||||| || || |||||||| |||||||||||||||||||||||||| |||||| |||| || |||||||    
T  8568913 tgaatatccaaatcttgaatcgattggaaagaagattgtagaaaagtgtggagggttgcctttagctgtgaaaacattggggaatctcttgc 8569004  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 5250256 - 5250141
Alignment:
Q  7 gcttttcacggcagaaatgtaagtgaatacccgaaacttgaatcaattggcaaaaatattgtagataagtgtggagggttgcctttagctgtaaaaacaa 106  Q
    |||||| |||| || |||| ||||||||| || || |||||||| ||||| || || ||| |||  ||||||||||||||||| ||||||||||||||      
T  5250256 gctttttacggaaggaatgcaagtgaatatccaaatcttgaatctattggtaagaaaattataggcaagtgtggagggttgccattagctgtaaaaactt 5250157  T
Q  107 tgggcaacctcttgcg 122  Q
    |||| || ||||||||    
T  5250156 tgggaaatctcttgcg 5250141  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 6736052 - 6735905
Alignment:
Q  29 gtgaatacccgaaacttgaatcaattggcaaaaatattgtagataagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgcgtaaaaa 128  Q
    ||||||| || || |||||||||||||| || || || || || |||||||||||||||||| ||||| ||||| || ||||| | || |||||||||||    
T  6736052 gtgaatatccaaatcttgaatcaattgggaagaaaatagtggagaagtgtggagggttgcctctagctataaaatcattgggccaacttttgcgtaaaaa 6735953  T
Q  129 attcactcaacatgaatgggaaaagatactagaggctgacatgtggcg 176  Q
    | |  || |||||||||||   |||||| | ||| |||| ||||||||    
T  6735952 actttctgaacatgaatggattaagatattggagactgatatgtggcg 6735905  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 5280768 - 5280679
Alignment:
Q  7 gcttttcacggcagaaatgtaagtgaatacccgaaacttgaatcaattggcaaaaatattgtagataagtgtggagggttgcctttagct 96  Q
    ||||||||||| | ||||| ||||||||| || || |||||||||||||| || || |||||| | ||||||||||||  ||||||||||    
T  5280768 gcttttcacggaaaaaatgcaagtgaatatccaaatcttgaatcaattgggaagaaaattgtaaacaagtgtggagggccgcctttagct 5280679  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 6947320 - 6947213
Alignment:
Q  40 aaacttgaatcaattggcaaaaatattgtagataagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgcgtaaaaaattcactcaac 139  Q
    ||||||||||||||||| |  || || || || |||||||||||||||||||||||| ||||| || ||||| | || ||||| ||||| ||  |||||     
T  6947320 aaacttgaatcaattgggaggaaaatagtggacaagtgtggagggttgcctttagctataaaatcactgggccaacttttgcgaaaaaagttttctcaag 6947221  T
Q  140 atgaatgg 147  Q
    ||||||||    
T  6947220 atgaatgg 6947213  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 7587921 - 7587856
Alignment:
Q  45 tgaatcaattggcaaaaatattgtagataagtgtggagggttgcctttagctgtaaaaacaatggg 110  Q
    |||||| |||||||| || |||||||| || ||||||||||||||| ||||||| |||||| ||||    
T  7587921 tgaatcgattggcaagaagattgtagagaaatgtggagggttgcctctagctgtgaaaacattggg 7587856  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 6882616 - 6882491
Alignment:
Q  7 gcttttcacggcagaaatgtaagtgaatacccgaaacttgaatcaattggcaaaaatattgtagataagtgtggagggttgcctttagctgtaaaaacaa 106  Q
    |||||||| || || ||||||  |||||| || || |||||||  || ||||| || || ||||| |||||||| ||||||||||||||  | ||||||     
T  6882616 gcttttcaaggtaggaatgtatttgaatatccaaatcttgaattgataggcaagaaaatagtagaaaagtgtggggggttgcctttagcactgaaaacat 6882517  T
Q  107 tgggcaacctcttgcgtaaaaaattc 132  Q
    |||| || |||||||  |||||||||    
T  6882516 tggggaatctcttgctaaaaaaattc 6882491  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 8454715 - 8454598
Alignment:
Q  30 tgaatacccgaaacttgaatcaattggcaaaaatattgtagataagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgcgtaaaaaa 129  Q
    |||||| || || ||||||||| |||| | ||| || || || |||||||||||||||||||||||| ||||| || ||||| | ||  |||| |||| |    
T  8454715 tgaatatccaaatcttgaatcagttggtagaaaaatagtggaaaagtgtggagggttgcctttagctataaaatcattgggccaacttctgcggaaaaca 8454616  T
Q  130 ttcactcaacatgaatgg 147  Q
    ||  || |||||||||||    
T  8454615 ttttctgaacatgaatgg 8454598  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 6479960 - 6480096
Alignment:
Q  40 aaacttgaatcaattggcaaaaatattgtagataagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgcgtaaaaaattcactcaac 139  Q
    |||||||||||||||||||  || ||  | || ||||||| |||||||||||||||| ||| | || ||||| | || ||||| ||||| ||  |||||     
T  6479960 aaacttgaatcaattggcaggaaaataatggacaagtgtgaagggttgcctttagctataatatcattgggccaacttttgcggaaaaagttttctcaag 6480059  T
Q  140 atgaatgggaaaagatactagaggctgacatgtggcg 176  Q
    ||||||||   |||||| | ||| |||| ||||||||    
T  6480060 atgaatggatgaagatattggagactgatatgtggcg 6480096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 25242099 - 25242243
Alignment:
Q  7 gcttttcacggcagaaatgtaagtgaatacccgaaacttgaatcaattggcaa--aaatatt-gtagataagtgtggagggttgcctttagctgtaaaaa 103  Q
    ||||||||||| || |||| ||||||||| || || |||| ||||||||||||  ||||| | ||||| |||||||||| ||||||||||||||||||||    
T  25242099 gcttttcacggaaggaatgcaagtgaatatccaaatcttgcatcaattggcaagaaaataatagtagaaaagtgtggagcgttgcctttagctgtaaaaa 25242198  T
Q  104 caatgggcaacctcttgcgtaaaaaattcactcaacatgaatggg 148  Q
    ||| ||| || |||||||| | ||||||| |||||||||||||||    
T  25242199 caacggggaatctcttgcgaagaaaattctctcaacatgaatggg 25242243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 6573276 - 6573354
Alignment:
Q  43 cttgaatcaattggcaaaaatattgtagataagtgtggagggttgcctttagctgtaaaaacaatgggcaacctcttgc 121  Q
    |||||||| ||||||||  | |||||||| || |||||||||||||||||||| || |||||| |||| || |||||||    
T  6573276 cttgaatcgattggcaaggagattgtagacaaatgtggagggttgcctttagccgtgaaaacattggggaatctcttgc 6573354  T

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Target: scaffold0425 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 7444 - 7517
Alignment:
Q  29 gtgaatacccgaaacttgaatcaattggcaaaaatattgtagataagtgtggagggttgcctttagctgtaaaa 102  Q
    ||||||| || || |||||| ||||||| || || || || || |||||||||||||||||||||||| |||||    
T  7444 gtgaatatccaaatcttgaaacaattgggaagaaaatagtggacaagtgtggagggttgcctttagctataaaa 7517  T

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