View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3097_low_15 (Length: 458)

Name: NF3097_low_15
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3097_low_15
NF3097_low_15
[»] chr2 (38 HSPs)
chr2 (1-452)||(39421955-39422406)
chr2 (109-452)||(39152053-39152396)
chr2 (25-452)||(39487681-39488107)
chr2 (11-178)||(39473584-39473751)
chr2 (226-452)||(39136436-39136662)
chr2 (226-452)||(39473968-39474194)
chr2 (233-452)||(39416067-39416286)
chr2 (88-263)||(39458889-39459064)
chr2 (336-450)||(39458366-39458480)
chr2 (37-175)||(39415025-39415163)
chr2 (34-257)||(39137462-39137685)
chr2 (11-128)||(39414915-39415032)
chr2 (236-306)||(39415182-39415252)
chr2 (19-139)||(39215372-39215492)
chr2 (11-167)||(39381644-39381800)
chr2 (381-450)||(39495389-39495458)
chr2 (143-302)||(39390536-39390695)
chr2 (64-170)||(44614607-44614713)
chr2 (88-173)||(39369835-39369920)
chr2 (250-306)||(39458552-39458608)
chr2 (224-314)||(38792655-38792745)
chr2 (388-437)||(39450669-39450718)
chr2 (336-436)||(39215096-39215196)
chr2 (369-437)||(39382047-39382115)
chr2 (231-285)||(39221870-39221924)
chr2 (231-285)||(39222080-39222134)
chr2 (227-285)||(39222290-39222348)
chr2 (183-256)||(39222487-39222560)
chr2 (226-263)||(39458721-39458758)
chr2 (389-449)||(39427545-39427605)
chr2 (180-215)||(39603169-39603204)
chr2 (381-439)||(39123690-39123748)
chr2 (232-290)||(39389785-39389843)
chr2 (153-286)||(39192841-39192974)
chr2 (153-286)||(39198521-39198654)
chr2 (11-68)||(39459063-39459120)
chr2 (259-296)||(39467649-39467686)
chr2 (25-101)||(39389347-39389423)
[»] chr7 (2 HSPs)
chr7 (226-452)||(19806797-19807023)
chr7 (34-257)||(19807412-19807635)
[»] chr5 (3 HSPs)
chr5 (336-418)||(17059030-17059112)
chr5 (24-101)||(33560771-33560848)
chr5 (226-275)||(33560303-33560352)
[»] chr3 (1 HSPs)
chr3 (101-170)||(51574944-51575013)
[»] scaffold0250 (1 HSPs)
scaffold0250 (64-128)||(4257-4321)


Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 39421955 - 39422406
Alignment:
Q  1 ttgaagtccgtaacctgacctttgaattgctcctcctttgatttaaactccttcactttaccgttaaattcctcctcttttgacaggaactccttcattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39421955 ttgaagtccgtaacctgacctttgaattgctcctcctttgatttaaactccttcaatttaccgttaaattcctcctcttttgacaggaactccttcattt 39422054  T
Q  101 gtccatcaaatttcttttctattgattcgagatccttcagtcggctttcaaaatgcttcttttctgattccagcttctccgctcggccttgaaattcatc 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39422055 gtccatcgaatttcttttctattgattcgagatccttcagtcggctttcaaaatgcttcttttctgattccagcttctccactcggccttgaaattcatc 39422154  T
Q  201 ctcttttgattcaaacccctcatcccggccatcaagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39422155 ctcttttgattcaaacccctcatcccggccatcaagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaa 39422254  T
Q  301 tcattctccagctcggccaattggccttccaattccttctgttttgaaatgtcagccatgactttacgaagttccagcttttttgtgttgagttcttgct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39422255 tcattctccagctcggccaattggccttccaattccttctgttttgaaatgtcatccatgactttacgaagttccagcttttttgtgttgagttcttgct 39422354  T
Q  401 tgcgctctccaatcaagttttccatcaaagagagctgtgattcctttgctac 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39422355 tgcgctctccaatcaagttttccatcaaagagagctgtgattcctttgctac 39422406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 109 - 452
Target Start/End: Complemental strand, 39152396 - 39152053
Alignment:
Q  109 aatttcttttctattgattcgagatccttcagtcggctttcaaaatgcttcttttctgattccagcttctccgctcggccttgaaattcatcctcttttg 208  Q
    |||| |||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| | |  |||||| |||||||||||||||||    
T  39152396 aattccttttccattgattcgagctccttcagtcggctctcgaaatgcttcttttctgattccagcttcttcacctggccttcaaattcatcctcttttg 39152297  T
Q  209 attcaaacccctcatcccggccatcaagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattctc 308  Q
    ||||||||||||   | || ||||||||||| ||||||||||||||||| ||||| || ||||||||||| ||||||||||| ||||||||||||||| |    
T  39152296 attcaaaccccttcactcgtccatcaagttgtttctctttagactcaagttccttaatccggctttcaaaatgcttctgtttggataccaaatcattcac 39152197  T
Q  309 cagctcggccaattggccttccaattccttctgttttgaaatgtcagccatgactttacgaagttccagcttttttgtgttgagttcttgcttgcgctct 408  Q
    ||||||    | ||||| ||| |||||||||||||||||||||| | ||||||||| ||||||||||| || |||||| |||||||||||||||||||||    
T  39152196 cagctcctttacttggctttcaaattccttctgttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctct 39152097  T
Q  409 ccaatcaagttttccatcaaagagagctgtgattcctttgctac 452  Q
    ||||||||||  ||||||||| |||||||   ||||||||||||    
T  39152096 ccaatcaagtcctccatcaaatagagctgcccttcctttgctac 39152053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 25 - 452
Target Start/End: Original strand, 39487681 - 39488107
Alignment:
Q  25 aattgctcctcctttgatttaaactccttcactttaccgttaaattcctcctcttttgacaggaactccttcatttgtccatcaaatttcttttctattg 124  Q
    ||||||| || ||||| ||||||||||||||| |  ||  | |||||||||||||||||| ||||||||||||||||| | |||  || |||||||  ||    
T  39487681 aattgcttcttctttgttttaaactccttcacgtgtcctctgaattcctcctcttttgactggaactccttcatttgttcttcatgttgcttttcttgtg 39487780  T
Q  125 attcgagatccttcagtcggctttcaaaatgcttcttttctgattccagcttctccgctcggccttgaaattcatcctcttttgattcaaacccct-cat 223  Q
     |||||| |||||| ||||||| ||| ||||||||||||| |||||  ||| || | | ||||||| |||||||||||||||| | |  ||| ||| |||    
T  39487781 cttcgagctccttctgtcggctctcagaatgcttcttttcagattcgggctccttcacccggccttcaaattcatcctcttttaactttaactccttcat 39487880  T
Q  224 cccggccatcaagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattctccagctcggccaattg 323  Q
     | |||||||||||||||||||||| |||||||  || ||| ||||| ||||||| || || ||| |  ||| |||||||||| |||||||   ||  ||    
T  39487881 tc-ggccatcaagttgcttctcttttgactcaatctcattcgttcggttttcaaaatggttatgtctgaataacaaatcattcaccagctccttcatctg 39487979  T
Q  324 gccttccaattccttctgttttgaaatgtcagccatgactttacgaagttccagcttttttgtgttgagttcttgcttgcgctctccaatcaagttttcc 423  Q
    || ||| |||| ||||||||||||||||| | ||||||||| ||||||||||  || |||||| | ||||||||||||| || ||||||||||||  |||    
T  39487980 gctttcaaatttcttctgttttgaaatgttatccatgacttcacgaagttccgtctcttttgtatcgagttcttgcttgtgc-ctccaatcaagtcctcc 39488078  T
Q  424 atcaaagagagctgtgattcctttgctac 452  Q
    |||||| | ||||||  ||||||||||||    
T  39488079 atcaaatatagctgtccttcctttgctac 39488107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 39473584 - 39473751
Alignment:
Q  11 taacctgacctttgaattgctcctcctttgatttaaactccttcactttaccgttaaattcctcctcttttgacaggaactccttcatttgtccatcaaa 110  Q
    ||||| |||||||||||| ||||| ||| | ||||||||||||||||| || |||||||||||||||||||||| |||||||||||| |||||||| |||    
T  39473584 taacccgacctttgaattcctccttcttcgttttaaactccttcacttgactgttaaattcctcctcttttgactggaactccttcacttgtccattaaa 39473683  T
Q  111 tttcttttctattgattcgagatccttcagtcggctttcaaaatgcttcttttctgattccagcttct 178  Q
    |||||||||| |||||||||| ||||||||| |||| || ||||||||||||||||||||| ||||||    
T  39473684 tttcttttcttttgattcgagctccttcagttggctctcgaaatgcttcttttctgattccggcttct 39473751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 226 - 452
Target Start/End: Complemental strand, 39136662 - 39136436
Alignment:
Q  226 cggccatcaagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattctccagctcggccaattggc 325  Q
    ||||| ||||||||| ||||||| |||||||| ||||| ||  ||||||| || ||||||||||||||||||||||||||| |||||||   || |||||    
T  39136662 cggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaatgcttctgttttgataccaaatcattcaccagctccttcacttggc 39136563  T
Q  326 cttccaattccttctgttttgaaatgtcagccatgactttacgaagttccagcttttttgtgttgagttcttgcttgcgctctccaatcaagttttccat 425  Q
     |||||||||||| ||||||||||||| | ||||||||| ||||||||||| || |||||| || ||||||| |||| |||||||||||||||  |||||    
T  39136562 tttccaattccttttgttttgaaatgttatccatgacttgacgaagttccaactcttttgtctttagttctttcttgtgctctccaatcaagtcctccat 39136463  T
Q  426 caaagagagctgtgattcctttgctac 452  Q
    ||||  ||||||   ||||||||||||    
T  39136462 caaaccgagctgcccttcctttgctac 39136436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 226 - 452
Target Start/End: Original strand, 39473968 - 39474194
Alignment:
Q  226 cggccatcaagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattctccagctcggccaattggc 325  Q
    ||||||||||| ||||||||||| |||| ||| | || ||| ||||||||||| ||||||||||||||||||||||||||| | |||||   || |||||    
T  39473968 cggccatcaagctgcttctcttttgacttaagcttctccatgcggctttcaaaatgcttctgttttgataccaaatcattcactagctccttcacttggc 39474067  T
Q  326 cttccaattccttctgttttgaaatgtcagccatgactttacgaagttccagcttttttgtgttgagttcttgcttgcgctctccaatcaagttttccat 425  Q
     ||| |||||||||||||||||||||| | ||||||||| || ||||||||  | ||||||||||||||||||||||||||||  |||||| |  ||||     
T  39474068 tttcaaattccttctgttttgaaatgttatccatgacttgacaaagttccatatcttttgtgttgagttcttgcttgcgctcttgaatcaattcctccac 39474167  T
Q  426 caaagagagctgtgattcctttgctac 452  Q
    |||| ||||||||   |||||||||||    
T  39474168 caaatagagctgtccatcctttgctac 39474194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 233 - 452
Target Start/End: Original strand, 39416067 - 39416286
Alignment:
Q  233 caagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattctccagctcggccaattggccttccaa 332  Q
    ||||||||||||| ||||||||||| |||||||| |||||||   | ||| | |||| |||||||||||||||| | |||||   || ||||| ||| ||    
T  39416067 caagttgcttctcattagactcaagctccttcatgcggcttttgtaatgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaa 39416166  T
Q  333 ttccttctgttttgaaatgtcagccatgactttacgaagttccagcttttttgtgttgagttcttgcttgcgctctccaatcaagttttccatcaaagag 432  Q
    |||||||||||||||||||| | |  ||| || ||||||||||| || |||||| |||||||||||||||||||| | |||||| |  |||| |||| ||    
T  39416167 ttccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatag 39416266  T
Q  433 agctgtgattcctttgctac 452  Q
    ||||||  ||||||||||||    
T  39416267 agctgtccttcctttgctac 39416286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 88 - 263
Target Start/End: Complemental strand, 39459064 - 39458889
Alignment:
Q  88 aactccttcatttgtccatcaaatttcttttctattgattcgagatccttcagtcggctttcaaaatgcttcttttctgattccagcttctccgctcggc 187  Q
    |||||||||| |||||| ||||||| ||||||| |||||||||| |||||||| | ||| || |||||||||||||||||||||| || || | | ||||    
T  39459064 aactccttcacttgtccttcaaattgcttttcttttgattcgagctccttcagcctgctctcgaaatgcttcttttctgattccaactccttcacccggc 39458965  T
Q  188 cttgaaattcatcctcttttgattcaaacccctcatcccggccatcaagttgcttctctttagactcaaggtcctt 263  Q
    ||| ||||||||||||||||||||||| | |||   | || ||||||| || |||||||||| ||||||| |||||    
T  39458964 cttcaaattcatcctcttttgattcaatctcctttgctcgaccatcaattttcttctctttacactcaagttcctt 39458889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 336 - 450
Target Start/End: Complemental strand, 39458480 - 39458366
Alignment:
Q  336 cttctgttttgaaatgtcagccatgactttacgaagttccagcttttttgtgttgagttcttgcttgcgctctccaatcaagttttccatcaaagagagc 435  Q
    ||||||||||||||||| | || |||||| | ||||||| | || |||||| ||||||||||||||||||||||||||||||| |||||||||| ||||     
T  39458480 cttctgttttgaaatgttatccttgacttgatgaagttctatctcttttgtcttgagttcttgcttgcgctctccaatcaagtcttccatcaaatagagt 39458381  T
Q  436 tgtgattcctttgct 450  Q
    |||| ||||||||||    
T  39458380 tgtgcttcctttgct 39458366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 39415025 - 39415163
Alignment:
Q  37 tttgatttaaactccttcactttaccgttaaattcctcctcttttgacaggaactccttcatttgtccatcaaatttcttttctattgattcgagatcct 136  Q
    ||||||| ||||||||||||||  || || | |||||||||||||||| ||||||| |||||| || | |  ||||  |||||| ||||||| || ||||    
T  39415025 tttgattcaaactccttcacttgtcctttgagttcctcctcttttgactggaactctttcattcgttctttgaattgattttcttttgattcaagctcct 39415124  T
Q  137 tcagtcggctttcaaaatgcttcttttctgattccagct 175  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  39415125 tcagttggctttcgaaatgcttcttttctgattccagct 39415163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 34 - 257
Target Start/End: Complemental strand, 39137685 - 39137462
Alignment:
Q  34 tcctttgatttaaactccttcactttaccgttaaattcctcctcttttgacaggaactccttcatttgtccatcaaatttcttttctattgattcgagat 133  Q
    |||||||||| ||| |||||||| |   | || |||||||| ||||||||| ||||||||||||||||| | ||| ||| |||||||  || ||| || |    
T  39137685 tcctttgattcaaaatccttcacgtgtactttgaattcctcttcttttgactggaactccttcatttgttcttcatattgcttttcttgtgtttcaagct 39137586  T
Q  134 ccttcagtcggctttcaaaatgcttcttttctgattccagcttctccgctcggccttgaaattcatcctcttttgattcaaacccctcatcccggccatc 233  Q
     |||| ||||||| ||||||||||||||||| ||||| || | || | | | ||||| |||||||||||||||| | |  ||| |||     ||||||||    
T  39137585 gcttctgtcggctctcaaaatgcttcttttcagattcgagttccttcaccctgccttcaaattcatcctcttttaactttaactccttcagtcggccatc 39137486  T
Q  234 aagttgcttctctttagactcaag 257  Q
    ||||| ||||||||||||||||||    
T  39137485 aagtttcttctctttagactcaag 39137462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 39414915 - 39415032
Alignment:
Q  11 taacctgacctttgaattgctcctcctttgatttaaactccttcactttaccgttaaattcctcctcttttgacaggaactccttcatttgtccatcaaa 110  Q
    |||| ||||||||||| | |||||||||||||| |||||||||||||| ||| || |||||| ||||||||||  ||||||||||||||||| |    ||    
T  39414915 taacttgacctttgaactcctcctcctttgattcaaactccttcacttgacctttgaattccccctcttttgagtggaactccttcatttgttctctgaa 39415014  T
Q  111 tttcttttctattgattc 128  Q
    |||||||||| |||||||    
T  39415015 tttcttttcttttgattc 39415032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 39415182 - 39415252
Alignment:
Q  236 gttgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattc 306  Q
    ||||||||||||| |||||||| |||||||||||||||||||| || ||| ||||||||||||||||||||    
T  39415182 gttgcttctcttttgactcaagctccttcattcggctttcaaaatgattcagttttgataccaaatcattc 39415252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 39215492 - 39215372
Alignment:
Q  19 cctttgaattgctcctcctttgatttaaactccttcactttaccgttaaattcctcctcttttgacaggaactccttcatttgtccatcaaatttctttt 118  Q
    |||||||||| |||||| ||||||| || ||||| ||||| ||| ||||||||||||| ||||||| ||||||||||| ||||| | || |||| |||||    
T  39215492 cctttgaattcctcctcatttgattcaagctcctccacttgacctttaaattcctcctgttttgactggaactccttcttttgttcttcgaattgctttt 39215393  T
Q  119 ctattgattcgagatccttca 139  Q
    || | | |||||||| |||||    
T  39215392 ctttggtttcgagattcttca 39215372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 39381644 - 39381800
Alignment:
Q  11 taacctgacctttgaattgctcctcctttgatttaaactccttcactttaccgttaaattcctcctcttttgacaggaactccttcatttgtccatcaaa 110  Q
    |||| |||||||||| || ||||| |||||||||||  ||||||||||| || | |||||||||||||||| |  | ||||||||||||||||| || ||    
T  39381644 taacttgacctttgagttcctccttctttgatttaatttccttcactttgccttcaaattcctcctcttttaattgaaactccttcatttgtccctcgaa 39381743  T
Q  111 tttcttttctattgattcgagatccttcagtcggctttcaaaatgcttcttttctga 167  Q
    || ||| ||| ||||||| | |||||| | ||| | |||||| | |||||| |||||    
T  39381744 ttgcttctctcttgattctatatcctttattcgtccttcaaagttcttcttctctga 39381800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 39495389 - 39495458
Alignment:
Q  381 ttttgtgttgagttcttgcttgcgctctccaatcaagttttccatcaaagagagctgtgattcctttgct 450  Q
    |||||| |||||||||||||||||||||||||||||||  ||||||||| ||||||||| || |||||||    
T  39495389 ttttgtcttgagttcttgcttgcgctctccaatcaagtcatccatcaaacagagctgtgcttgctttgct 39495458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 143 - 302
Target Start/End: Original strand, 39390536 - 39390695
Alignment:
Q  143 ggctttcaaaatgcttcttttctgattccagcttctccgctcggccttgaaattcatcctcttttgattcaaacccctcatcccggccatcaagttgctt 242  Q
    ||||||||||||||||| |||  |||||||| | || |  | |||||| ||||||   |||||||||||||  | |||   | ||||  ||| |||||||    
T  39390536 ggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgattcatgctccttcactcggctttcatgttgctt 39390635  T
Q  243 ctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatc 302  Q
    |||||| |||||||  ||||||||| |||||||||| |||||||||||||||| ||||||    
T  39390636 ctcttttgactcaaactccttcatttggctttcaaaatgcttctgttttgatagcaaatc 39390695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 44614713 - 44614607
Alignment:
Q  64 ttaaattcctcctcttttgacaggaactccttcatttgtccatcaaatttcttttctattgattcgagatccttcagtcggctttcaaaatgcttctttt 163  Q
    |||||||||||||||| |||| |||||||||||| |  ||  ||||||| ||||||| ||||||| |  |||||  ||||||| || |||||||||||||    
T  44614713 ttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctttt 44614614  T
Q  164 ctgattc 170  Q
    |||||||    
T  44614613 ctgattc 44614607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 39369920 - 39369835
Alignment:
Q  88 aactccttcatttgtccatcaaatttcttttctattgattcgagatccttcagtcggctttcaaaatgcttcttttctgattccag 173  Q
    ||||||||| ||||||| ||||||| ||||||| |||||||||| |||| ||||| ||| || | |||||||||||| ||||||||    
T  39369920 aactccttcttttgtccttcaaattgcttttcttttgattcgagctcctgcagtctgctctcgatatgcttcttttccgattccag 39369835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 39458608 - 39458552
Alignment:
Q  250 gactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattc 306  Q
    |||||||| ||||||||||||||||| || |||||||||||||||| ||||||||||    
T  39458608 gactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattc 39458552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 314
Target Start/End: Complemental strand, 38792745 - 38792655
Alignment:
Q  224 cccggccatcaagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattctccagctc 314  Q
    ||||||| |||  |||||| ||||| ||||||||||||||||||||| |||| ||  ||||||||||  |||| ||||||||| |||||||    
T  38792745 cccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcgaaaagcttctgtttcaatacaaaatcattcaccagctc 38792655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 437
Target Start/End: Complemental strand, 39450718 - 39450669
Alignment:
Q  388 ttgagttcttgcttgcgctctccaatcaagttttccatcaaagagagctg 437  Q
    ||||| ||| |||||||||||||||||||||||||||||||| |||||||    
T  39450718 ttgagctctagcttgcgctctccaatcaagttttccatcaaatagagctg 39450669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 436
Target Start/End: Complemental strand, 39215196 - 39215096
Alignment:
Q  336 cttctgttttgaaatgtcagccatgactttacgaagttccagcttttttgtgttgagttcttgcttgcgctctccaatcaagttttccatcaaagagagc 435  Q
    ||||| ||||||||||| | |  |||||| |  |||||| | || |||||| ||||| |||||||||||||||||||||||||  ||||||||| |||||    
T  39215196 cttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagc 39215097  T
Q  436 t 436  Q
    |    
T  39215096 t 39215096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 39382047 - 39382115
Alignment:
Q  369 aagttccagcttttttgtgttgagttcttgcttgcgctctccaatcaagttttccatcaaagagagctg 437  Q
    |||||||| || |||||  ||||| ||| |||||||||||||||||| ||||||||||||| |||||||    
T  39382047 aagttccacctcttttgccttgagctctagcttgcgctctccaatcatgttttccatcaaatagagctg 39382115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 39221924 - 39221870
Alignment:
Q  231 atcaagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttc 285  Q
    ||||||||||||||||||||||||||  ||||||||| ||||||| || ||||||    
T  39221924 atcaagttgcttctctttagactcaaactccttcatttggctttcgaaatgcttc 39221870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 39222134 - 39222080
Alignment:
Q  231 atcaagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttc 285  Q
    ||||||||||||||||||||||||||  ||||||||| ||||||| || ||||||    
T  39222134 atcaagttgcttctctttagactcaaactccttcatttggctttcgaaatgcttc 39222080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 39222348 - 39222290
Alignment:
Q  227 ggccatcaagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttc 285  Q
    |||| |||||||||||||||||||||||||  ||||||||| ||||||| || ||||||    
T  39222348 ggccttcaagttgcttctctttagactcaaactccttcatttggctttcgaaatgcttc 39222290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 39222560 - 39222487
Alignment:
Q  183 tcggccttgaaattcatcctcttttgattcaaacccctcatcccggccatcaagttgcttctctttagactcaa 256  Q
    |||||||| ||| ||||||||||| ||||||||| |||   | |||||||||| || |||||||||||||||||    
T  39222560 tcggccttcaaagtcatcctctttagattcaaactccttcactcggccatcaaatttcttctctttagactcaa 39222487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 39458758 - 39458721
Alignment:
Q  226 cggccatcaagttgcttctctttagactcaaggtcctt 263  Q
    |||||||||||||||||||||||||||||||| |||||    
T  39458758 cggccatcaagttgcttctctttagactcaagttcctt 39458721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 449
Target Start/End: Original strand, 39427545 - 39427605
Alignment:
Q  389 tgagttcttgcttgcgctctccaatcaagttttccatcaaagagagctgtgattcctttgc 449  Q
    ||||||| ||||||||||||||||||||||  | ||||||| ||||||||| || ||||||    
T  39427545 tgagttcctgcttgcgctctccaatcaagtcattcatcaaacagagctgtgctttctttgc 39427605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 39603204 - 39603169
Alignment:
Q  180 cgctcggccttgaaattcatcctcttttgattcaaa 215  Q
    ||||||||||| ||||||||||||||||||||||||    
T  39603204 cgctcggccttcaaattcatcctcttttgattcaaa 39603169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 439
Target Start/End: Complemental strand, 39123748 - 39123690
Alignment:
Q  381 ttttgtgttgagttcttgcttgcgctctccaatcaagttttccatcaaagagagctgtg 439  Q
    |||||| || ||||||| ||||||||||||||||| ||  |||||||||||||| ||||    
T  39123748 ttttgtcttcagttctttcttgcgctctccaatcatgtcgtccatcaaagagagttgtg 39123690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 39389785 - 39389843
Alignment:
Q  232 tcaagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttt 290  Q
    |||||||||||| |||| |||||||| ||||||||| |||||| | | |||||||||||    
T  39389785 tcaagttgcttcccttttgactcaagctccttcatttggcttttataatgcttctgttt 39389843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 286
Target Start/End: Original strand, 39192841 - 39192974
Alignment:
Q  153 atgcttcttttctgattccagcttctccgctcggccttgaaattcatcctcttttgattcaaacccctcatcccggccatcaagttgcttctctttagac 252  Q
    ||||||| |||  |||||||||| || | |||||||||  |||||   ||||||||||||||||  ||   |||| || ||| ||||| |||| || |||    
T  39192841 atgcttccttttagattccagctcctgcactcggccttccaattccgtctcttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgac 39192940  T
Q  253 tcaaggtccttcattcggctttcaaattgcttct 286  Q
    ||||| ||||||||| |||||||||  |||||||    
T  39192941 tcaagctccttcatttggctttcaatgtgcttct 39192974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 286
Target Start/End: Original strand, 39198521 - 39198654
Alignment:
Q  153 atgcttcttttctgattccagcttctccgctcggccttgaaattcatcctcttttgattcaaacccctcatcccggccatcaagttgcttctctttagac 252  Q
    ||||||| |||  |||||||||| || | |||||||||  |||||   ||||||||||||||||  ||   |||| || ||| ||||| |||| || |||    
T  39198521 atgcttccttttagattccagctcctgcactcggccttccaattccgtctcttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgac 39198620  T
Q  253 tcaaggtccttcattcggctttcaaattgcttct 286  Q
    ||||| ||||||||| |||||||||  |||||||    
T  39198621 tcaagctccttcatttggctttcaatgtgcttct 39198654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 39459120 - 39459063
Alignment:
Q  11 taacctgacctttgaattgctcctcctttgatttaaactccttcactttaccgttaaa 68  Q
    |||||||||||||||||| |||||  ||||||| |||||||||| ||| ||| |||||    
T  39459120 taacctgacctttgaattcctccttatttgattcaaactccttcccttgacctttaaa 39459063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 39467686 - 39467649
Alignment:
Q  259 tccttcattcggctttcaaattgcttctgttttgatac 296  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  39467686 tccttcaatcggctttcaaaatgcttctgttttgatac 39467649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 39389347 - 39389423
Alignment:
Q  25 aattgctcctcctttgatttaaactccttcactttaccgttaaattcctcctcttttgacaggaactccttcatttg 101  Q
    |||| |||||| ||||||| ||||||||||||||| || |  |||| |||||||||||||   | ||||||||||||    
T  39389347 aattcctcctcttttgattgaaactccttcacttttccttcgaatttctcctcttttgactcaagctccttcatttg 39389423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 226 - 452
Target Start/End: Complemental strand, 19807023 - 19806797
Alignment:
Q  226 cggccatcaagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattctccagctcggccaattggc 325  Q
    ||||| ||||||||| ||||||| |||||||| ||||| ||  ||||||| || |||||||||||||||||||||||||||  ||||||   ||  ||||    
T  19807023 cggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaatgcttctgttttgataccaaatcattcatcagctccttcacgtggc 19806924  T
Q  326 cttccaattccttctgttttgaaatgtcagccatgactttacgaagttccagcttttttgtgttgagttcttgcttgcgctctccaatcaagttttccat 425  Q
     |||||||||||| ||||||||||||| | ||||||||| | ||||||||| || |||||| || ||||||| ||||||||||||||||||||  |||||    
T  19806923 tttccaattccttttgttttgaaatgttatccatgacttgatgaagttccaactcttttgtctttagttctttcttgcgctctccaatcaagtcctccat 19806824  T
Q  426 caaagagagctgtgattcctttgctac 452  Q
    ||||  ||||||   ||||||||||||    
T  19806823 caaacggagctgcccttcctttgctac 19806797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 257
Target Start/End: Complemental strand, 19807635 - 19807412
Alignment:
Q  34 tcctttgatttaaactccttcactttaccgttaaattcctcctcttttgacaggaactccttcatttgtccatcaaatttcttttctattgattcgagat 133  Q
    |||||||||| ||| |||||||| |   | || |||||||| ||||||||| ||||||||||||||||| | ||| ||| |||||||  || ||||||      
T  19807635 tcctttgattcaaaatccttcacgtgtgctttgaattcctcttcttttgactggaactccttcatttgttcttcatattgcttttcttgtgtttcgagcc 19807536  T
Q  134 ccttcagtcggctttcaaaatgcttcttttctgattccagcttctccgctcggccttgaaattcatcctcttttgattcaaacccctcatcccggccatc 233  Q
     |||| ||||||| || |||||||||||||| ||||| |||| || ||| ||||||| |||||||||||||||| | |  ||| |||     | ||||||    
T  19807535 gcttctgtcggctctcgaaatgcttcttttcagattcgagctccttcgcccggccttcaaattcatcctcttttaactttaactccttcagtcagccatc 19807436  T
Q  234 aagttgcttctctttagactcaag 257  Q
    |||||||||| |||||||||||||    
T  19807435 aagttgcttcgctttagactcaag 19807412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 17059112 - 17059030
Alignment:
Q  336 cttctgttttgaaatgtcagccatgactttacgaagttccagcttttttgtgttgagttcttgcttgcgctctccaatcaagt 418  Q
    ||||||||||||||||| | ||||||||| |||||||||   || ||||||   |||||||||||||||||||||||||||||    
T  17059112 cttctgttttgaaatgttatccatgacttgacgaagttctctctcttttgtcacgagttcttgcttgcgctctccaatcaagt 17059030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 33560848 - 33560771
Alignment:
Q  24 gaattgctcctcctttgatttaaactccttcactttaccgttaaattcctcctcttttgacaggaactccttcatttg 101  Q
    ||||| |||||| ||||||| ||||||||||||||  || || |||| |||||||||||||  || ||||||||||||    
T  33560848 gaattcctcctcttttgattgaaactccttcacttgtcctttgaatttctcctcttttgactcgagctccttcatttg 33560771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 33560352 - 33560303
Alignment:
Q  226 cggccatcaagttgcttctctttagactcaaggtccttcattcggctttc 275  Q
    ||||| ||||||||||||||||| |||| ||| ||||||||| |||||||    
T  33560352 cggccttcaagttgcttctcttttgactgaagctccttcatttggctttc 33560303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 51575013 - 51574944
Alignment:
Q  101 gtccatcaaatttcttttctattgattcgagatccttcagtcggctttcaaaatgcttcttttctgattc 170  Q
    |||| |||||||  || ||| |||||| ||| ||||||| | ||||||||||||||||||||||||||||    
T  51575013 gtccttcaaattgtttctcttttgatttgagttccttcacttggctttcaaaatgcttcttttctgattc 51574944  T

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Target: scaffold0250 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 4321 - 4257
Alignment:
Q  64 ttaaattcctcctcttttgacaggaactccttcatttgtccatcaaatttcttttctattgattc 128  Q
    ||||||||||||||||||||| | |||||||||  |||||| |  ||| |||||||| |||||||    
T  4321 ttaaattcctcctcttttgactgaaactccttctcttgtcctttgaatatcttttctcttgattc 4257  T

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