View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3097_low_16 (Length: 450)
Name: NF3097_low_16
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_16 |
 | |
|
| [»] scaffold0201 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 23352423 - 23352100
Alignment:
| Q |
1 |
gccatatttctagatatcgcatgcttttttagaggagagagtaaatttcatgtaacacatatgttggaagcttgtgagttctttgcaaaaagtgggattg |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23352423 |
gccatatttctagatatcacatgcttttttagaggagagagtaaatttcatgtaacacatatgttggaagcttgtgagttctttgcaaaaagtgggattg |
23352324 |
T |
|
| Q |
101 |
aagtccttctagataaagctctcatacaactacagctattttggcactggcagttcaaatcggaaactgatggtttagaaatgcatgatttgttacaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23352323 |
aagtccttctagataaagctctcatacaactacaactattttggcactggcagttcaaatcggaaactgatggtttagaaatgcatgatttgttacaaga |
23352224 |
T |
|
| Q |
201 |
aatgggacaggagattgttaatcaagaatctaatgaccctggaaaacgaagtcggttgtggagagcggaagaaatttctgatctattaaaagaaaacaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23352223 |
aatgggacaggagattgttaatcaagaatctaaagaccctggaaaacgaagtcggttgtggaaagcggaagaaatttctgatctattaaaagaaaacaag |
23352124 |
T |
|
| Q |
301 |
gtaagtagaggatgcaatcacttc |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
23352123 |
gtaagtagaggatgcaatcacttc |
23352100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 3 - 320
Target Start/End: Complemental strand, 23386756 - 23386439
Alignment:
| Q |
3 |
catatttctagatatcgcatgcttttttagaggagagagtaaatttcatgtaacacatatgttggaagcttgtgagttctttgcaaaaagtgggattgaa |
102 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| | |||| | ||| | |||| | |||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
23386756 |
catatttctagatatcgcatgcttgttgagaggagataataaaatatttgtgatacatttcttggaagcttgtgagttctttgcagaaagtgggatagaa |
23386657 |
T |
|
| Q |
103 |
gtccttctagataaagctctcatacaactacagctattttggcactggcagttcaaatcggaaactgatggtttagaaatgcatgatttgttacaagaaa |
202 |
Q |
| |
|
|||||||||||||||||| |||||||| || | | || |||||||| | ||||| ||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
23386656 |
gtccttctagataaagctttcatacaaataaaaccatattggcactcgtttgccaaattggaaattgatggtttagatatgcatgatttgttacaagaaa |
23386557 |
T |
|
| Q |
203 |
tgggacaggagattgttaatcaagaatctaatgaccctggaaaacgaagtcggttgtggagagcggaagaaatttctgatctattaaaagaaaacaaggt |
302 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| || |||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||| |
|
|
| T |
23386556 |
tgggacgggagattgttaatcaagagtctaaagaacctggaaaacgaagtcggttatggagagctgaagaaatatctgatatattaaaagaaaacaaggt |
23386457 |
T |
|
| Q |
303 |
aagtagaggatgcaatca |
320 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
23386456 |
aagcagaggatgcaatca |
23386439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 3 - 320
Target Start/End: Complemental strand, 23463761 - 23463444
Alignment:
| Q |
3 |
catatttctagatatcgcatgcttttttagaggagagagtaaatttcatgtaacacatatgttggaagcttgtgagttctttgcaaaaagtgggattgaa |
102 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||| |||| | ||| | |||| | |||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
23463761 |
catatttctagatatcgcatgcttgttgagaggagagaataaaatgtttgtgatacatttcttggaagcttgtgagttctttgcagaaagtgggatagaa |
23463662 |
T |
|
| Q |
103 |
gtccttctagataaagctctcatacaactacagctattttggcactggcagttcaaatcggaaactgatggtttagaaatgcatgatttgttacaagaaa |
202 |
Q |
| |
|
|||||||||||||||||| |||||||| || | | |||||||| | | ||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23463661 |
gtccttctagataaagctttcatacaaataaaatcaaattggcactcgttggccaaattggaaactgatggtttagatatgcatgatttgttacaagaaa |
23463562 |
T |
|
| Q |
203 |
tgggacaggagattgttaatcaagaatctaatgaccctggaaaacgaagtcggttgtggagagcggaagaaatttctgatctattaaaagaaaacaaggt |
302 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| || |||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||| |
|
|
| T |
23463561 |
tgggacgggagattgttaatcaagagtctaaagatcctggaaaacgaagtcggttatggagagctgaagaaatatctgatatattaaaagaaaacaaggt |
23463462 |
T |
|
| Q |
303 |
aagtagaggatgcaatca |
320 |
Q |
| |
|
|| ||||| ||||||||| |
|
|
| T |
23463461 |
aactagagaatgcaatca |
23463444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 3 - 320
Target Start/End: Complemental strand, 23405130 - 23404813
Alignment:
| Q |
3 |
catatttctagatatcgcatgcttttttagaggagagagtaaatttcatgtaacacatatgttggaagcttgtgagttctttgcaaaaagtgggattgaa |
102 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||| | |||| | ||| | |||| |||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
23405130 |
catatttctagatattgcatgcttgttgagaggagataataaaatggctgtgatacatttgttggaagcttgtgagttctttgcagaaagtgggatagaa |
23405031 |
T |
|
| Q |
103 |
gtccttctagataaagctctcatacaactacagctattttggcactggcagttcaaatcggaaactgatggtttagaaatgcatgatttgttacaagaaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||| || | | ||||| || | | ||||| | ||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
23405030 |
gtccttctagataaagctctcatacaaataaaatcaaattggctctcgttggccaaattgcaaattgatggtttagatatgcatgatttgttacaagaaa |
23404931 |
T |
|
| Q |
203 |
tgggacaggagattgttaatcaagaatctaatgaccctggaaaacgaagtcggttgtggagagcggaagaaatttctgatctattaaaagaaaacaaggt |
302 |
Q |
| |
|
||||| |||||||||||||||||| ||||| || |||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||| |
|
|
| T |
23404930 |
tgggatgggagattgttaatcaagagtctaaagaacctggaaaacgaagtcggttatggagagctgaagaaatatctgatatattaaaagaaaacaaggt |
23404831 |
T |
|
| Q |
303 |
aagtagaggatgcaatca |
320 |
Q |
| |
|
|| ||||| ||||||||| |
|
|
| T |
23404830 |
aactagagaatgcaatca |
23404813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 23472926 - 23472604
Alignment:
| Q |
1 |
gccatatttctagatatcgcatgcttttttagaggagagagtaaatttcatgtaacacatatgttggaagcttgtgagttctttgcaaaaagtgggattg |
100 |
Q |
| |
|
||||||||| ||||||| ||||||||||| ||||||||| |||| | | ||| | || |||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
23472926 |
gccatatttttagatattgcatgctttttgagaggagagcataaaatatttataatagatttgttggaagcttgtgagttctttgcagaaagtgggatag |
23472827 |
T |
|
| Q |
101 |
aagtccttctagataaagctctcatacaactacagctattttggcactggcagttcaaatcggaaactgatggtttagaaatgcatgatttgttacaaga |
200 |
Q |
| |
|
||||| || |||||||||||||||||||| || | | | |||||||| | | ||| | |||| |||| ||||| | || ||||||||||||||||| |
|
|
| T |
23472826 |
aagtcgttttagataaagctctcatacaagtaaaaccaaattggcactcgtatgccaagttggaagttgatagtttacatatacatgatttgttacaaga |
23472727 |
T |
|
| Q |
201 |
aatgggacaggagattgttaatcaagaatctaatgaccctggaaaacgaagtcggttgtggagagcggaagaaatttctgatctattaaaagaaaacaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |
|
|
| T |
23472726 |
aatgggacaggagattgttaatcaagaatctataaaccctggaaaacgaagtcggttgtggagagctaaagaaatatctgatatattaaaagaaaacaag |
23472627 |
T |
|
| Q |
301 |
gtaagtagaggatgcaatcactt |
323 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
23472626 |
gtaagcagaggatgcaatcactt |
23472604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 23440397 - 23440075
Alignment:
| Q |
1 |
gccatatttctagatatcgcatgcttttttagaggagagagtaaatttcatgtaacacatatgttggaagcttgtgagttctttgcaaaaagtgggattg |
100 |
Q |
| |
|
||||||||| ||||||| ||||||||||| ||||||||| |||| | | ||| | || |||||||||||||| ||||||||||| |||||||||| | |
|
|
| T |
23440397 |
gccatatttttagatattgcatgctttttgagaggagagcataaaatatttataatagatttgttggaagcttgtaagttctttgcagaaagtgggatag |
23440298 |
T |
|
| Q |
101 |
aagtccttctagataaagctctcatacaactacagctattttggcactggcagttcaaatcggaaactgatggtttagaaatgcatgatttgttacaaga |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||| || | | | |||||||| | | ||| | ||| |||| ||||| | |||||||||||||||||||| |
|
|
| T |
23440297 |
aagtccttttagataaagctctcatacaagtaaaaccaaattggcactcgtatgccaagtttgaagttgatagtttacatatgcatgatttgttacaaga |
23440198 |
T |
|
| Q |
201 |
aatgggacaggagattgttaatcaagaatctaatgaccctggaaaacgaagtcggttgtggagagcggaagaaatttctgatctattaaaagaaaacaag |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |
|
|
| T |
23440197 |
aatgggacgggagattgttaatcaagaatctataaaccctggaaaacgaagtcggttgtggagagctaaagaaatatctgatatattaaaagaaaacaag |
23440098 |
T |
|
| Q |
301 |
gtaagtagaggatgcaatcactt |
323 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
23440097 |
gtaagcagaggatgcaatcactt |
23440075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 23454541 - 23454218
Alignment:
| Q |
1 |
gccatatttctagatatcgcatgcttttttagaggagagagtaaatttcatgtaacacatatgttggaagcttgtgagttctttgcaaaaagtgggattg |
100 |
Q |
| |
|
|||||||||||||| | ||||||||| | |||| ||||||||||| | |||| | | | |||||||||||||||||||||||| ||||||||| | |
|
|
| T |
23454541 |
gccatatttctagacaacgcatgcttgctgagagaagagagtaaatctttcgtaagaaaacttttggaagcttgtgagttctttgcagtaagtgggatag |
23454442 |
T |
|
| Q |
101 |
aagtccttctagataaagctctcatacaactacagctattttggcactggcagttcaaatcggaaactgatggtttagaaatgcatgatttgttacaaga |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | | | ||||| | |||| ||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
23454441 |
aagtccttctagataaatctctcatacaactaaaaaaaatatggcatgtttatgtcaagtcggacgttgatggtatagaaatgcatgatttgttacaaga |
23454342 |
T |
|
| Q |
201 |
aatgggacaggagattgttaatcaagaatctaatgaccctggaaaacgaagtcggttgtggagagcggaagaaatttctgatctattaaaagaaaacaag |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||| || |||||||| |||||| |||| ||| |||||||| |
|
|
| T |
23454341 |
aatgggacgagagattgttaatcaagaatctaagaaccctggaaaacgaagtcgattgtggaatgctgaagaaatatctgatgtattgaaaaaaaacaag |
23454242 |
T |
|
| Q |
301 |
gtaagtagaggatgcaatcacttc |
324 |
Q |
| |
|
||||||||| ||||||| ||||| |
|
|
| T |
23454241 |
gtaagtagacaatgcaattacttc |
23454218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 23499544 - 23499227
Alignment:
| Q |
1 |
gccatatttctagatatcgcatgcttttttagaggagagagtaaatttcatgtaacacatatgttggaagcttgtgagttctttgcaaaaagtgggattg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| || || ||| || ||||| | ||| | | || | |||||||||| |||||||||||||| ||||||||| | |
|
|
| T |
23499544 |
gccatatttctagacatcgcatgcttgttgagtggacagggtaaagattttgttagagatctattggaagcttctgagttctttgcaataagtgggatag |
23499445 |
T |
|
| Q |
101 |
aagtccttctagataaagctctcatacaactacagctattttggcactggcagttcaaatcggaaactgatggtttagaaatgcatgatttgttacaaga |
200 |
Q |
| |
|
| ||||||||||||||||||||||| |||||| | | ||| ||| || ||||| |||| | | | ||||||||||||||||||||||||| |
|
|
| T |
23499444 |
acgtccttctagataaagctctcattcaactagattcaattttgca-tg-----tcaaaagggaagtttgtactatagaaatgcatgatttgttacaaga |
23499351 |
T |
|
| Q |
201 |
aatgggacaggagattgttaatcaagaatctaatgaccctggaaaacgaagtcggttgtggagagcggaagaaatttctgatctattaaaagaaaacaag |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | || ||||||||||||||||| |||||| ||| ||||| || | |||| |||| ||| | |||||| |
|
|
| T |
23499350 |
aatgggacgggagattgttaatcaagaatctgaagatcctggaaaacgaagtcgactgtggaaagctgaagagatatttgatgtattgaaaaataacaag |
23499251 |
T |
|
| Q |
301 |
gtaagtagaggatgcaatcacttc |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
23499250 |
gtaagtagaggatgcaatcacttc |
23499227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 23479065 - 23478759
Alignment:
| Q |
1 |
gccatatttctagatatcgcatgcttttttagaggagagagtaaatttcatgtaacacatatgttggaagcttgtgagttctttgcaaaaagtgggattg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| || || ||| || ||||| | ||||| | || | ||||||||| ||| |||||||||| ||||||||| | |
|
|
| T |
23479065 |
gccatatttctagacatcgcatgcttgttgagtggacagggtaaagattttgtaagagatctactggaagcttctgatttctttgcaataagtgggatag |
23478966 |
T |
|
| Q |
101 |
aagtccttctagataaagctctcatacaactacagctattttggcactggcagttcaaatcggaaactgatggtttagaaatgcatgatttgttacaaga |
200 |
Q |
| |
|
| ||||||||||||||||||||||| |||||| | | ||| ||| || ||||| |||| | | | ||||||||||||||||||||||||| |
|
|
| T |
23478965 |
acgtccttctagataaagctctcattcaactagattcaattttgca-tg-----tcaaaagggaagtttgtactatagaaatgcatgatttgttacaaga |
23478872 |
T |
|
| Q |
201 |
aatgggacaggagattgttaatcaagaatctaatgaccctggaaaacgaagtcggttgtggagagcggaagaaatttctgatctattaaaagaaaacaag |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | || ||||||||||||||||| |||||| ||| ||||| || || ||| |||||||| | ||||| |
|
|
| T |
23478871 |
aatgggacgggagattgttaatcaagaatctgaagatcctggaaaacgaagtcgactgtggaaagctgaagagatatccgatgtattaaaatataacaaa |
23478772 |
T |
|
| Q |
301 |
gtaagtagaggat |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
23478771 |
gtaagtagaggat |
23478759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 23469007 - 23468710
Alignment:
| Q |
1 |
gccatatttctagatatcgcatgcttttttagaggagagagtaaatttcatgtaacacatatgttggaagcttgtgagttctttgcaaaaagtgggattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| |||| |||| | ||||| |||| | |||||||||||| |||||||||| || |||||| | |
|
|
| T |
23469007 |
gccatatttctagatatcgcatgcttgttgagagaagagcataaagattttgtaaaacatgtattggaagcttgtcgattctttgcaacaattgggatag |
23468908 |
T |
|
| Q |
101 |
aagtccttctagataaagctctcatacaactacagctattttggcactggcagttcaaatc-ggaaactgatggtttagaaatgcatgatttgttacaag |
199 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | || ||||||| | ||||| ||| |||| |||||||||||| ||||||||||| |
|
|
| T |
23468907 |
aagtccttctagataaagctctcatagaactaaaacttatttggca-------tgtaaatctggatgttgatacaatagaaatgcatgttttgttacaag |
23468815 |
T |
|
| Q |
200 |
aaatgggacaggagattgttaatcaagaatctaatgaccctggaaaacgaagtcggttgtggagagcggaagaaatttctgatctattaaaagaaaacaa |
299 |
Q |
| |
|
||||||| | |||||||||||||||||||||||| |||||||| ||| ||||| | |||||||| || |||||||| ||||| |||| ||| | ||||| |
|
|
| T |
23468814 |
aaatgggtcgggagattgttaatcaagaatctaaagaccctgggaaaagaagtagattgtggagggctgaagaaatatctgaattattgaaaaacaacaa |
23468715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 64 - 287
Target Start/End: Complemental strand, 23447713 - 23447496
Alignment:
| Q |
64 |
ttggaagcttgtgagttctttgcaaaaagtgggattgaagtccttctagataaagctctcatacaactacagctattttggcactggcagttcaaatcgg |
163 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||| | ||| ||| || |||||| || |
|
|
| T |
23447713 |
ttggaagcttgtgagttctttgcaataagtgggatagaagtccttctagataaggctctcattcaactaggttcaattttgca-tg-----tcaaatggg |
23447620 |
T |
|
| Q |
164 |
aaactgatggtttagaaatgcatgatttgttacaagaaatgggacaggagattgttaatcaagaatctaatgaccctggaaaacgaagtcggttgtggag |
263 |
Q |
| |
|
|| | | | ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | |||||||||||||||||||| |||||| |
|
|
| T |
23447619 |
aagtttgtattatagaaatgcatgatttgttacaagaaatgggacgggaaattgttaatcaagaatctgaagaccctggaaaacgaagtcgactgtggaa |
23447520 |
T |
|
| Q |
264 |
agcggaagaaatttctgatctatt |
287 |
Q |
| |
|
||| || || || |||||| |||| |
|
|
| T |
23447519 |
agctgatgagatatctgatgtatt |
23447496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 23398420 - 23398294
Alignment:
| Q |
1 |
gccatatttctagatatcgcatgcttttttagaggagagagtaaatttcatgtaacacatatgttggaagcttgtgagttctttgcaaaaagtgggattg |
100 |
Q |
| |
|
|||| |||||||||||||| ||||| ||| |||||||||| ||| ||| ||||||| ||||||||||||| | ||||||||||||| ||||||||| | |
|
|
| T |
23398420 |
gccacatttctagatatcgaatgctgtttgagaggagagaataatttttttgtaacagatatgttggaagcaagagagttctttgcaataagtgggatag |
23398321 |
T |
|
| Q |
101 |
aagtccttctagataaagctctcataca |
128 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
23398320 |
aagtccttctaga-aaagctctcataca |
23398294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 379 - 434
Target Start/End: Complemental strand, 23352046 - 23351991
Alignment:
| Q |
379 |
caacctttcttaatgattaatctaatttttgtttgtcagggaactgaagttgtgga |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23352046 |
caacctttcttaatgattaatctaatttttgtttgtcagggaactgaagttgtgga |
23351991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 23386377 - 23386325
Alignment:
| Q |
382 |
cctttcttaatgattaatctaatttttgtttgtcagggaactgaagttgtgga |
434 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23386377 |
cctttcctaattattaatctaatttttatttgtcagggaactgaagttgtgga |
23386325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 23404751 - 23404699
Alignment:
| Q |
382 |
cctttcttaatgattaatctaatttttgtttgtcagggaactgaagttgtgga |
434 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23404751 |
cctttcctaattattaatctaatttttatttgtcagggaactgaagttgtgga |
23404699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 23463382 - 23463330
Alignment:
| Q |
382 |
cctttcttaatgattaatctaatttttgtttgtcagggaactgaagttgtgga |
434 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23463382 |
cctttcctaattattaatctaatttttatttgtcagggaactgaagttgtgga |
23463330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 23440010 - 23439959
Alignment:
| Q |
382 |
cctttcttaatgattaatctaatttttgtttgtcagggaactgaagttgtgga |
434 |
Q |
| |
|
|||||| |||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23440010 |
cctttcctaattattaatctaatttttgtt-gtcagggaactgaagttgtgga |
23439959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 23447498 - 23447448
Alignment:
| Q |
274 |
atttctgatctattaaaagaaaacaaggtaagtagaggatgcaatcacttc |
324 |
Q |
| |
|
||||||||| |||| ||| | ||||||||||||||||||||||| |||||| |
|
|
| T |
23447498 |
atttctgatgtattgaaaaataacaaggtaagtagaggatgcaagcacttc |
23447448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 11927 - 11604
Alignment:
| Q |
1 |
gccatatttctagatatcgcatgcttttttagaggagagagtaaatttcatgtaacacatatgttggaagcttgtgagttctttgcaaaaagtgggattg |
100 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| || | || || ||||||||||||||||||||||||||||||||| ||||| ||||||| | |
|
|
| T |
11927 |
gccatatttctggatatcgcatgcttttatagaggaaagcatgaaatttatgtaacacatatgttggaagcttgtgagttctatgcaataagtggggtaa |
11828 |
T |
|
| Q |
101 |
aagtccttctagataaagctctcatacaactacagctattttggcactggcagttcaa-atcggaaactgatggtttagaaatgcatgatttgttacaag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | | |||||||||||| || || ||||||| |||| |||| |||||||||||||||||| || |
|
|
| T |
11827 |
aagtccttctagataaagctctcatacaactaaaaccaatttggcactggc-gtgcaggatcggaagttgatagttttgaaatgcatgatttgttaatag |
11729 |
T |
|
| Q |
200 |
aaatgggacaggagattgttaatcaagaatctaatgaccctggaaaacgaagtcggttgtggagagcggaagaaatttctgatctattaaaagaaaacaa |
299 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||| ||| |||||||| |||||| | |||||||||||||| |
|
|
| T |
11728 |
aaatgggacaggagattgtcaatcaagaatctaaagaccctggaaaacgaagtcggctgtggaaagctgaagaaatatctgatatgttaaaagaaaacaa |
11629 |
T |
|
| Q |
300 |
ggtaagtagaggatgcaatcacttc |
324 |
Q |
| |
|
|||||||||||| |||||||||||| |
|
|
| T |
11628 |
ggtaagtagaggttgcaatcacttc |
11604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 11546 - 11494
Alignment:
| Q |
382 |
cctttcttaatgattaatctaatttttgtttgtcagggaactgaagttgtgga |
434 |
Q |
| |
|
|||||| |||| | ||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
11546 |
cctttcctaattactaatctaatttttgtttctcagggaactgatgttgtgga |
11494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 12896666 - 12896721
Alignment:
| Q |
176 |
tagaaatgcatgatttgttacaagaaatgggacaggagattgttaatcaagaatct |
231 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
12896666 |
tagaaatgcatgatttgttagtagaaatgggacgagagattgttaagcaagaatct |
12896721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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