View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_19 (Length: 438)
Name: NF3097_low_19
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 53659972 - 53660208
Alignment:
| Q |
1 |
caaagctaaagacatcagctttgtgatcataaggtttatgctcaataacctttcatatgtaagagagatcacaaattagttgtaattgttttgac-aaag |
99 |
Q |
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| T |
53659972 |
caaagctaaagacatcagctttgtgatcatatggtttatgctcaataacctttcatatgtaagagagatcacaaattagttgtaattgttttgaccaaag |
53660071 |
T |
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| Q |
100 |
acaagaataaaccacacacaagttggaagatcaaaggaaaaagaggaaagaacaagacacaaaagtttacgcgatttggtcaatgtgacctatgtcacnn |
199 |
Q |
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| T |
53660072 |
acaagaataaaccacacacaagtcggaagatcaaaggaaaaagaggaaagaacaagacacaaaagtttacgcgatttggtcaatgtgacctacgtcacaa |
53660171 |
T |
|
| Q |
200 |
nnnnntcagtgagatacttatttcgttaggacgaaca |
236 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
53660172 |
agaaatcagtgagatacttatttcgttaggacgaaca |
53660208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 233 - 438
Target Start/End: Original strand, 53660244 - 53660449
Alignment:
| Q |
233 |
aacaagagagatggtgaggtttataaaatagggaacaaaattgttattatctatttgcaaagcgtataagcaacgnnnnnnnctaaaattcatgttagct |
332 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
53660244 |
aacaagagagagggtgaggtttataaaatagggaacaaaattgttattatctatttgcaaagcgtataagcaacgaaaaaaactaaaattcatgttagct |
53660343 |
T |
|
| Q |
333 |
ttaatagatattcagttccaattattcaattttcagcataaaagccgtcattctcattccaacttgtctaggttcgtcttaaacttcctcatccaaacct |
432 |
Q |
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| T |
53660344 |
ttaatagatattcagttccaattattcaattttcagcataaaagccgtcattctcattccaactagtctaggttcgtcttaaacttcctcatccaaacct |
53660443 |
T |
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| Q |
433 |
gtaggt |
438 |
Q |
| |
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|||||| |
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| T |
53660444 |
gtaggt |
53660449 |
T |
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