View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3097_low_2 (Length: 616)

Name: NF3097_low_2
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3097_low_2
NF3097_low_2
[»] chr4 (8 HSPs)
chr4 (10-479)||(47730945-47731415)
chr4 (477-602)||(47731491-47731616)
chr4 (314-475)||(50823362-50823520)
chr4 (477-602)||(50823157-50823282)
chr4 (41-186)||(26334726-26334871)
chr4 (477-602)||(11376476-11376601)
chr4 (323-475)||(26334376-26334526)
chr4 (485-602)||(26334185-26334302)
[»] chr5 (6 HSPs)
chr5 (81-279)||(24873130-24873327)
chr5 (477-602)||(24873806-24873931)
chr5 (481-602)||(11052317-11052436)
chr5 (314-479)||(24873567-24873730)
chr5 (550-595)||(11106549-11106594)
chr5 (10-60)||(24873331-24873381)
[»] chr2 (2 HSPs)
chr2 (477-602)||(43709059-43709184)
chr2 (442-479)||(43709260-43709297)
[»] chr7 (2 HSPs)
chr7 (477-602)||(9083289-9083413)
chr7 (477-517)||(27154928-27154968)


Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 10 - 479
Target Start/End: Original strand, 47730945 - 47731415
Alignment:
Q  10 aagaatatccactgttagcagtgtagatgcaatttttgttatgagtccatatgaatgcgtcctctacagaagcattgaaattgagttgcatattatttat 109  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  47730945 aagaatatccactattagcagtgtagatgcaatttttgttatgagtccatatgaatgcgttctctgcagaagcattgaaattgagttgcatattatttat 47731044  T
Q  110 gagatctatggcaaatgagggaagctgagtgtaaaggatgtgagcatgggggctgccagaagagaaaacatctttaaccgacagcaacatatcatgaatg 209  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  47731045 gaggtctatggcaaatgagggaagctgagtgtaaagaatgtgagcatgggggctgccagaagagaatacatctttaactgacagcaacatatcatgaatg 47731144  T
Q  210 tcaatgcagggagtaagggactctatgaaaccaagagaacatcaagggcatgaccagaaagaggaagaa-ctgacccattcatagaaatgtagctcattc 308  Q
    ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||    
T  47731145 tcaatgcagggagcaagggactctatgaaacgaagagaacaccaagggcatgaccagaaagaggaagaacctgacccgttcatagaaatgtagcccattc 47731244  T
Q  309 tgcatatgatgagacttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctcta 408  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47731245 tgcatatgatgagacttttcttcattgtgtgtgtgtgattgaacccattctaagcacttgtggcagcaagcaggatttaatcaatctgattttttctcta 47731344  T
Q  409 acgacgacgctataaattggatcaagaagagggtgatggggccttactatttcctttttgcagcaacaatt 479  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47731345 acgacgacactataaattggatcaagaacagggtgatggggccttactatttcctttttgcagcaacaatt 47731415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 477 - 602
Target Start/End: Original strand, 47731491 - 47731616
Alignment:
Q  477 attcaaggtatgattgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacagcaataatcattctt 576  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47731491 attcaaggtatggttgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacaacaataatcattctt 47731590  T
Q  577 gtgtcatccttaatgttgatggaagt 602  Q
    ||||||||||||||||||||||||||    
T  47731591 gtgtcatccttaatgttgatggaagt 47731616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 314 - 475
Target Start/End: Complemental strand, 50823520 - 50823362
Alignment:
Q  314 atgatgagacttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgac 413  Q
    |||||||||||||||||||||  ||||| ||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||     
T  50823520 atgatgagacttttcttcatt--gtgtgcgtgattgcacccattctaagcacttgtggcagcaagcaggttttaatcaatctgattttttctctaatgag 50823423  T
Q  414 gacgctataaattggatcaagaagagggtgatggggccttactatttcctttttgcagcaac 475  Q
    || ||||||||||||||||||||  | ||||| |  ||||||  ||||||||||||||||||    
T  50823422 gatgctataaattggatcaagaatggagtgat-gacccttaccctttcctttttgcagcaac 50823362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 477 - 602
Target Start/End: Complemental strand, 50823282 - 50823157
Alignment:
Q  477 attcaaggtatgattgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacagcaataatcattctt 576  Q
    |||||||||||| |||||||||| ||||||| | |||||| |||||||||||||||| |||||| ||||||||| || ||||||| ||||||||||||||    
T  50823282 attcaaggtatggttgataccctaaaagcttgtcatccttccatctctagtactactgatgaagaccaattcattaagtggaacaacaataatcattctt 50823183  T
Q  577 gtgtcatccttaatgttgatggaagt 602  Q
    ||||||| || |||||||||||||||    
T  50823182 gtgtcattctaaatgttgatggaagt 50823157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 41 - 186
Target Start/End: Original strand, 26334726 - 26334871
Alignment:
Q  41 atttttgttatgagtccatatgaatgcgtcctctacagaagcattgaaattgagttgcatattatttatgagatctatggcaaatgagggaagctgagtg 140  Q
    |||||||||||||||| |||||||| | ||||||| ||||||||||||  || ||||||||||||||||||| |||||| ||||||| || |||||| ||    
T  26334726 atttttgttatgagtcgatatgaatacatcctctagagaagcattgaacctgtgttgcatattatttatgaggtctatgacaaatgaaggtagctgaatg 26334825  T
Q  141 taaaggatgtgagcatgggggctgccagaagagaaaacatctttaa 186  Q
    ||||| || || |||||| ||| |  | ||||||||||||||||||    
T  26334826 taaagaatttgtgcatggaggccgttaaaagagaaaacatctttaa 26334871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 477 - 602
Target Start/End: Complemental strand, 11376601 - 11376476
Alignment:
Q  477 attcaaggtatgattgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacagcaataatcattctt 576  Q
    |||||| ||||| |||||| |||||||||||||||||||| ||| |  ||||||| | |||||| | |||||||||| |||| || ||||||||||| ||    
T  11376601 attcaaagtatggttgatagcctcaaagcttcttatccttccatttgaagtactattgatgaagacaaattcatcaagtggagcaacaataatcattttt 11376502  T
Q  577 gtgtcatccttaatgttgatggaagt 602  Q
    |||||||| |||||||||||||||||    
T  11376501 gtgtcatcgttaatgttgatggaagt 11376476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 323 - 475
Target Start/End: Complemental strand, 26334526 - 26334376
Alignment:
Q  323 cttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgacgacgctata 422  Q
    ||||||||||  || |||||||||||| ||||||||||| ||||||| | || | ||   ||||||||||| |||  ||||||| || || |||||||||    
T  26334526 cttttcttca--ttatgtgtgtgattgcacccattctaaacacttgtggtagtaggccatatttaatcaatatgaccttttctccaatgaagacgctata 26334429  T
Q  423 aattggatcaagaagagggtgatggggccttactatttcctttttgcagcaac 475  Q
    |||||||||||||| ||||||||||| ||| ||| ||||||||||||||||||    
T  26334428 aattggatcaagaatagggtgatgggccctcactctttcctttttgcagcaac 26334376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 485 - 602
Target Start/End: Complemental strand, 26334302 - 26334185
Alignment:
Q  485 tatgattgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacagcaataatcattcttgtgtcatc 584  Q
    |||| ||||||||||||||||||  ||||||| |||||||| ||||||  |||||  |||||||||||| ||||||| ||| |||| || ||||||||||    
T  26334302 tatggttgataccctcaaagcttgctatccttccatctctaatactaccgatgaaagccaattcatcaactggaacaacaacaatctttgttgtgtcatc 26334203  T
Q  585 cttaatgttgatggaagt 602  Q
    | |||||||||| |||||    
T  26334202 cgtaatgttgattgaagt 26334185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 81 - 279
Target Start/End: Complemental strand, 24873327 - 24873130
Alignment:
Q  81 gcattgaaattgagttgcatattatttatgagatctatggcaaatgagggaagctgagtgtaaaggatgtgagcatgggggctgccagaagagaaaacat 180  Q
    ||||||||||||| |||||||||||| ||||| |||||||  || || || || ||||||||||||||||| |||| ||||||| |||||||||| ||||    
T  24873327 gcattgaaattgaattgcatattattgatgaggtctatggtgaaagaaggcagttgagtgtaaaggatgtgtgcat-ggggctggcagaagagaatacat 24873229  T
Q  181 ctttaaccgacagcaacatatcatgaatgtcaatgcagggagtaagggactctatgaaaccaagagaacatcaagggcatgaccagaaagaggaagaac 279  Q
    ||||||| ||||     | |||||||||||||||| |||| | ||||||| ||||||||||||||||||  |||||||| ||||| |||||||||||||    
T  24873228 ctttaactgacaattgtaaatcatgaatgtcaatgtagggtgcaagggaccctatgaaaccaagagaactccaagggcaagaccaaaaagaggaagaac 24873130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 477 - 602
Target Start/End: Original strand, 24873806 - 24873931
Alignment:
Q  477 attcaaggtatgattgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacagcaataatcattctt 576  Q
    |||||||||||| |||||||||| ||||||| |||||||| || ||||| || |  | |||||| |||||||||||| |||||||  ||||||||| |||    
T  24873806 attcaaggtatggttgataccctaaaagcttgttatccttccacctctaatattggtgatgaagaccaattcatcaagtggaacaataataatcatgctt 24873905  T
Q  577 gtgtcatccttaatgttgatggaagt 602  Q
    ||||||||||||||||||||||||||    
T  24873906 gtgtcatccttaatgttgatggaagt 24873931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 481 - 602
Target Start/End: Complemental strand, 11052436 - 11052317
Alignment:
Q  481 aaggtatgattgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacagcaataatcattcttgtgt 580  Q
    |||||| | ||||||||||||||||||  |  |||| |||||||| | ||||  | |||| | |||||||||| ||||||| |||||||||||||||||     
T  11052436 aaggtacggttgataccctcaaagcttgct--ccttccatctctaatgctaccgaagaagactaattcatcaagtggaacaacaataatcattcttgtga 11052339  T
Q  581 catccttaatgttgatggaagt 602  Q
    ||||||||||||||||||||||    
T  11052338 catccttaatgttgatggaagt 11052317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 314 - 479
Target Start/End: Original strand, 24873567 - 24873730
Alignment:
Q  314 atgatgagacttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgac 413  Q
    |||||||||||||||||||||  | ||| ||||| | ||||||||||| || |||  ||| || |  | |||||||||| ||||||||| ||| ||  |     
T  24873567 atgatgagacttttcttcatt--gcgtgcgtgatagcacccattctaaacatttgcggcaacatgtcgaatttaatcaagctgattttt-ctccaattaa 24873663  T
Q  414 gacgctataaattggatcaagaa-gagggtgatggggccttactatttcctttttgcagcaacaatt 479  Q
    || ||||||||||||| |||| | | |||||||||| ||||||| ||||||||||||||||||||||    
T  24873664 gatgctataaattggaccaaggatgggggtgatgggcccttactctttcctttttgcagcaacaatt 24873730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 550 - 595
Target Start/End: Original strand, 11106549 - 11106594
Alignment:
Q  550 tcaaatggaacagcaataatcattcttgtgtcatccttaatgttga 595  Q
    |||||||||||| |||||| || |||||||||||||||||||||||    
T  11106549 tcaaatggaacaacaataaccactcttgtgtcatccttaatgttga 11106594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 24873381 - 24873331
Alignment:
Q  10 aagaatatccactgttagcagtgtagatgcaatttttgttatgagtccata 60  Q
    ||||||||||||| ||||| | |||||||| ||||||| ||||||||||||    
T  24873381 aagaatatccactattagcggcgtagatgccatttttgctatgagtccata 24873331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 477 - 602
Target Start/End: Complemental strand, 43709184 - 43709059
Alignment:
Q  477 attcaaggtatgattgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacagcaataatcattctt 576  Q
    |||||||||||| ||||||||||| |||||| |||||||| ||||| |||||||||| |||||| ||||||||||||  |||||| ||||||||||| ||    
T  43709184 attcaaggtatggttgataccctctaagcttgttatccttccatctttagtactactgatgaagaccaattcatcaagcggaacaacaataatcattttt 43709085  T
Q  577 gtgtcatccttaatgttgatggaagt 602  Q
    ||||||||||||||||||||||||||    
T  43709084 gtgtcatccttaatgttgatggaagt 43709059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 442 - 479
Target Start/End: Complemental strand, 43709297 - 43709260
Alignment:
Q  442 tgatggggccttactatttcctttttgcagcaacaatt 479  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  43709297 tgatgggcccttactatttcctttttgcagcaacaatt 43709260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 477 - 602
Target Start/End: Complemental strand, 9083413 - 9083289
Alignment:
Q  477 attcaaggtatgattgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacagcaataatcattctt 576  Q
    |||||||| ||| |||||||||||||||||| |||| ||| |||||||| |||||   |||||| | |||||||||| |||| || ||||||||||||||    
T  9083413 attcaaggcatggttgataccctcaaagcttgttatacttccatctctaatactatctatgaagac-aattcatcaagtggaccaacaataatcattctt 9083315  T
Q  577 gtgtcatccttaatgttgatggaagt 602  Q
    |||||| |||||||||||||||||||    
T  9083314 gtgtcaaccttaatgttgatggaagt 9083289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 517
Target Start/End: Original strand, 27154928 - 27154968
Alignment:
Q  477 attcaaggtatgattgataccctcaaagcttcttatccttt 517  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  27154928 attcaaggtatggttgacaccctcaaagcttcttatccttt 27154968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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