View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_25 (Length: 410)
Name: NF3097_low_25
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 35029909 - 35029534
Alignment:
| Q |
10 |
attatactatttggaccataatctttcatccattattcactttgtctatatcatcatcatattcatataataataatgtctgtcataggttcttttcttt |
109 |
Q |
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| T |
35029909 |
attatactatttggaccataatctttcatccataattcactttgtctatatcatcatcatattcatataataataatgtctgtcataggttcttttcttt |
35029810 |
T |
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| Q |
110 |
ccctaccttcccaaatcaccggcttaactgcacacatgttcacaacatggctgttttgatttgatcatgttgtgttagaatcttattggtgtaatataac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35029809 |
ccctaccttcccaaatcaccggcttaactgcacacatgttcacaacatggctgttttgat-----catgttgtgttagaatcttattggtgtaatataac |
35029715 |
T |
|
| Q |
210 |
aaacaacattatttgggtcagtgtccactctttttcttccaccttaatttgtttagagctattaatgttgtttgcaactgtgcctggtgattgtgatgtg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35029714 |
aaacaacattatttgggtcagtgtccactctttttcttccaccttaatttgtttagagctattaatgttgtttgcaactgtgcctggtgattgtgatgtg |
35029615 |
T |
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| Q |
310 |
aagccatgtgtttaggactagaagcttttatgagttttgttatgaacaatgaccaagtttctctaaaatttcaggacacac |
390 |
Q |
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| T |
35029614 |
aagccatgtgtttaggactagaagcttttatgagttttgttatgaacaatgaccaagtttctctaaaatttcaggacacac |
35029534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 77 - 282
Target Start/End: Original strand, 36859983 - 36860186
Alignment:
| Q |
77 |
taataataatgtctgtcataggt--tcttttctttccctaccttcccaaatcaccggcttaact-gcacacatgttcacaacatggctgttttgatttga |
173 |
Q |
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| T |
36859983 |
taataataatttctgtcctaggtgctcttttctttccctaccttcccaaatcacaggcttaacttgcacacatgctcacaacatggttgttttgct---- |
36860078 |
T |
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| Q |
174 |
tcatgttgtgttagaatcttattggtgtaatataacaaacaacattatttgggtcagtgtccactctttttcttccaccttaatttgtttagagctatta |
273 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36860079 |
-catgttgtgttagaatcttatcggtgtaatataacaaacaacattatttgggtcagtgtccactctttttcttccaccttaatttgtttagagcaatta |
36860177 |
T |
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| Q |
274 |
atgttgttt |
282 |
Q |
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||||||||| |
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| T |
36860178 |
atgttgttt |
36860186 |
T |
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