View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3097_low_27 (Length: 406)

Name: NF3097_low_27
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3097_low_27
NF3097_low_27
[»] chr3 (3 HSPs)
chr3 (20-216)||(18161265-18161461)
chr3 (234-406)||(18160929-18161104)
chr3 (269-329)||(19407206-19407263)
[»] chr1 (1 HSPs)
chr1 (20-189)||(33899020-33899194)
[»] chr8 (10 HSPs)
chr8 (20-124)||(5831587-5831693)
chr8 (20-189)||(19459358-19459533)
chr8 (20-189)||(19557036-19557211)
chr8 (23-143)||(19403254-19403373)
chr8 (20-106)||(19409181-19409267)
chr8 (20-106)||(19456200-19456286)
chr8 (20-106)||(19524791-19524877)
chr8 (20-106)||(19471082-19471166)
chr8 (20-106)||(19542006-19542090)
chr8 (20-106)||(19590607-19590691)
[»] chr6 (3 HSPs)
chr6 (20-120)||(6796471-6796572)
chr6 (65-114)||(7441269-7441318)
chr6 (65-93)||(33823151-33823179)
[»] scaffold0653 (1 HSPs)
scaffold0653 (65-95)||(964-994)
[»] chr7 (2 HSPs)
chr7 (65-95)||(9287323-9287353)
chr7 (65-95)||(9297115-9297145)
[»] chr4 (1 HSPs)
chr4 (65-95)||(35752692-35752722)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 18161461 - 18161265
Alignment:
Q  20 agtggatggtgttagatcggattgtgtgtggtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgcggaaatttggtat 119  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  18161461 agtggatggtgttagatcggattgtgtgtggtgtccgaggaaacgagaggtggaggatcacttgttttgtcgatgtaacttggtagcggaaatttggtat 18161362  T
Q  120 ttgatctttaaatggattggaacggtgtcattctaccatgtggtctccctcatagattatttctcttcttattctttatcaagaaagcaccctaagg 216  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  18161361 ttgatctttaaatggattggaatggtgtcattctaccatgtggtctctctcctagattatttctcttcttattctttatcaaaaaagcaccctaagg 18161265  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 234 - 406
Target Start/End: Complemental strand, 18161104 - 18160929
Alignment:
Q  234 taatgcaggaatttaagaatcagaaacacaataaaatacactgtcagtggagtcaactctt-ctagctacattatattctgcttaattcattctttc--c 330  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||  |||  | ||||||||||||||||||||||| ||||  |    
T  18161104 taatgcaggaatttaagaatcagaaatgcaataaaatacactgtcagtggagtcaaccctggctacattcattatattctgcttaattcattatttctcc 18161005  T
Q  331 tttcattcagtacataaggtagagaataataagacagcttcctagcaaataacagttgtatgcaatagcctatgat 406  Q
    |||||||| |||||||||||||| ||||||||||||||||||| | ||||||||||||||| |||| |||||||||    
T  18161004 tttcattctgtacataaggtagaaaataataagacagcttccttgaaaataacagttgtatacaattgcctatgat 18160929  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 19407263 - 19407206
Alignment:
Q  269 atacactgtcagtggagtcaactcttctagctacattatattctgcttaattcattctttc 329  Q
    |||||||||| ||||||||||||||    || |||||||||||||||||||||||| ||||    
T  19407263 atacactgtccgtggagtcaactctg---gcaacattatattctgcttaattcattatttc 19407206  T

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Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 33899194 - 33899020
Alignment:
Q  20 agtggatggtgttagatcggattgtgtgtggtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgcggaaatttggtat 119  Q
    |||| |||| ||||| | |||||||||||||||| ||||||  | ||||||  | |||||||||||||| ||||||||||| ||||||||||| || |||    
T  33899194 agtgaatggagttagtttggattgtgtgtggtgtttgaggattcaagaggtaaatgatcacttgttttgcagatgtaactttgttgcggaaatatgatat 33899095  T
Q  120 ttgatctttaaatggattggaacggtgtcattctacc-----atgtggtctccctcatagattatttctcttctt 189  Q
    | ||| ||||||||||||| ||||| |||||||||||     ||||||| |||||| ||||| |||| |||||||    
T  33899094 tcgatttttaaatggattgtaacggggtcattctaccctaaaatgtggtttccctcctagatcatttatcttctt 33899020  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 5831693 - 5831587
Alignment:
Q  20 agtggatggtgttagatcggattgtgtgtggtgtctgaggaaacgagaggtg--gaggatcacttgttttgtagatgtaacttggttgcggaaatttggt 117  Q
    ||||||||||||||| ||| |||||||||||||||||||||  | |||||||  |||||||||||||||||||||| ||| || |||| |||||||| ||    
T  5831693 agtggatggtgttagttcgaattgtgtgtggtgtctgaggattcaagaggtgtggaggatcacttgttttgtagatctaattttgttgtggaaatttagt 5831594  T
Q  118 atttgat 124  Q
    |||||||    
T  5831593 atttgat 5831587  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 19459533 - 19459358
Alignment:
Q  20 agtggatggtgttagatcggattgtgtgtggtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgcggaaatttggtat 119  Q
    ||||||||||||||| |||||||||| ||||||||  ||||  |||||||||||||||| ||| |||||||||||||||||   ||| || ||||| |||    
T  19459533 agtggatggtgttagttcggattgtgggtggtgtccaaggattcgagaggtggaggatcgcttattttgtagatgtaacttcactgcagacatttgatat 19459434  T
Q  120 ttgatctttaaatggattggaacggtg-tcattctacc-----atgtggtctccctcatagattatttctcttctt 189  Q
    |  || ||||||||||| ||||||| | ||||||||||      ||| || |||||| ||||||||||||||||||    
T  19459433 tcaatttttaaatggatcggaacggagatcattctacctagaagtgttgtttccctcctagattatttctcttctt 19459358  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 19557211 - 19557036
Alignment:
Q  20 agtggatggtgttagatcggattgtgtgtggtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgcggaaatttggtat 119  Q
    ||||||||||||||| |||||||||| ||||||||  ||||  |||||||||||||||| ||| |||||||||||||||||   ||| || ||||| |||    
T  19557211 agtggatggtgttagttcggattgtgggtggtgtccaaggattcgagaggtggaggatcgcttattttgtagatgtaacttcactgcagacatttgatat 19557112  T
Q  120 ttgatctttaaatggattggaacggtg-tcattctacc-----atgtggtctccctcatagattatttctcttctt 189  Q
    |  || ||||||||||| ||||||| | ||||||||||      ||| || |||||| ||||||||||||||||||    
T  19557111 tcaatttttaaatggatcggaacggagatcattctacctagaagtgttgtttccctcctagattatttctcttctt 19557036  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 19403254 - 19403373
Alignment:
Q  23 ggatggtgttagatcggattgtgtgtggtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgcggaaatttggtatttg 122  Q
    |||||||||||| | ||| |||||||||||||  || |  |||||| |||||||||||||||||||||||| ||||||  |||| || |||||||||| |    
T  19403254 ggatggtgttagtttggaatgtgtgtggtgtcctagaattcgagagctggaggatcacttgttttgtagat-taacttcattgcagacatttggtattcg 19403352  T
Q  123 atctttaaatggattggaacg 143  Q
    || ||||||||||| ||||||    
T  19403353 atttttaaatggatcggaacg 19403373  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 19409181 - 19409267
Alignment:
Q  20 agtggatggtgttagatcggattgtgtgtggtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgc 106  Q
    ||||||||||||||  || || | |||||||||||  ||||  ||||||||| |||||||||||||||||||| ||||||| |||||    
T  19409181 agtggatggtgttatttcagactctgtgtggtgtcctaggattcgagaggtgaaggatcacttgttttgtagaagtaacttcgttgc 19409267  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 19456200 - 19456286
Alignment:
Q  20 agtggatggtgttagatcggattgtgtgtggtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgc 106  Q
    ||||||||||||||  || || | |||||||||||  ||||  ||||||||| |||||||||||||||||||| ||||||| |||||    
T  19456200 agtggatggtgttatttcagactctgtgtggtgtcctaggattcgagaggtgaaggatcacttgttttgtagaagtaacttcgttgc 19456286  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 19524877 - 19524791
Alignment:
Q  20 agtggatggtgttagatcggattgtgtgtggtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgc 106  Q
    ||||||||||||||  || || | |||||||||||  ||||  ||||||||| |||||||||||||||||||| ||||||| |||||    
T  19524877 agtggatggtgttatttcagactctgtgtggtgtcctaggattcgagaggtgaaggatcacttgttttgtagaagtaacttcgttgc 19524791  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 19471166 - 19471082
Alignment:
Q  20 agtggatggtgttagatcggattgtgtgtggtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgc 106  Q
    ||||||||||||||  || ||||||||||||||||  ||||  |  |||||| ||||||||||| |||||||| ||||||| |||||    
T  19471166 agtggatggtgttatttcagattgtgtgtggtgtcctaggattc--gaggtgaaggatcacttgctttgtagacgtaacttcgttgc 19471082  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 19542090 - 19542006
Alignment:
Q  20 agtggatggtgttagatcggattgtgtgtggtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgc 106  Q
    ||||||||||||||  || ||||||||||||||||  ||||  |  |||||| ||||||||||| |||||||| ||||||| |||||    
T  19542090 agtggatggtgttatttcagattgtgtgtggtgtcctaggattc--gaggtgaaggatcacttgctttgtagacgtaacttcgttgc 19542006  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 19590607 - 19590691
Alignment:
Q  20 agtggatggtgttagatcggattgtgtgtggtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgc 106  Q
    ||||||||||||||  || ||||||||||||||||  ||||  |  |||||| ||||||||||| |||||||| ||||||| |||||    
T  19590607 agtggatggtgttatttcagattgtgtgtggtgtcctaggattc--gaggtgaaggatcacttgctttgtagacgtaacttcgttgc 19590691  T

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Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 6796572 - 6796471
Alignment:
Q  20 agtggatggtgttagatcggattgtgtgtggtgtctgaggaaa-cgagaggtggaggatcacttgttttgtagatgtaacttggttgcggaaatttggta 118  Q
    ||||| ||||||| | ||||||| |||||||||| || || |  |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6796572 agtgggtggtgtttgttcggattatgtgtggtgtatgggggattcgagagatggaggatcacttgttttgtagatgtaactttgttgcggaaatttggta 6796473  T
Q  119 tt 120  Q
    ||    
T  6796472 tt 6796471  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 7441269 - 7441318
Alignment:
Q  65 agaggtggaggatcacttgttttgtagatgtaacttggttgcggaaattt 114  Q
    |||||||||| ||||||||||||||||||||||||| |||  ||||||||    
T  7441269 agaggtggagaatcacttgttttgtagatgtaactttgttatggaaattt 7441318  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 33823179 - 33823151
Alignment:
Q  65 agaggtggaggatcacttgttttgtagat 93  Q
    |||||||||||||||||||||||||||||    
T  33823179 agaggtggaggatcacttgttttgtagat 33823151  T

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Target: scaffold0653 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 95
Target Start/End: Original strand, 964 - 994
Alignment:
Q  65 agaggtggaggatcacttgttttgtagatgt 95  Q
    |||||||||||||||||||||||||||||||    
T  964 agaggtggaggatcacttgttttgtagatgt 994  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 95
Target Start/End: Complemental strand, 9287353 - 9287323
Alignment:
Q  65 agaggtggaggatcacttgttttgtagatgt 95  Q
    |||||||||||||||||||||||||||||||    
T  9287353 agaggtggaggatcacttgttttgtagatgt 9287323  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 95
Target Start/End: Complemental strand, 9297145 - 9297115
Alignment:
Q  65 agaggtggaggatcacttgttttgtagatgt 95  Q
    |||||||||||||||||||||||||||||||    
T  9297145 agaggtggaggatcacttgttttgtagatgt 9297115  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 95
Target Start/End: Complemental strand, 35752722 - 35752692
Alignment:
Q  65 agaggtggaggatcacttgttttgtagatgt 95  Q
    |||||||||||||||||||||||||||||||    
T  35752722 agaggtggaggatcacttgttttgtagatgt 35752692  T

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