View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_29 (Length: 396)
Name: NF3097_low_29
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 41 - 381
Target Start/End: Complemental strand, 40637889 - 40637542
Alignment:
| Q |
41 |
tcaattatttggttgttttgtgtttggaattcatagacaggtggaattcatagatcttctaagtcttttatgcatatgatttggttgttttgtgtttgga |
140 |
Q |
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| T |
40637889 |
tcaattatttggttgttttgtgtttggaattcatagacaggtggaattcatagatcttctaagtcttttatgcatatgatttggttgttttgtgtttgga |
40637790 |
T |
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| Q |
141 |
taatatggaaagaaaggaaatagaagaattttccacaacaaagaagctaagctatcccaattgttagataaaattaagttgcaattttattagcgttgaa |
240 |
Q |
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| T |
40637789 |
taatatggaaggaaaggaaatagaagaattttcgacaacaaagaagctaaactaccccaattgttagataaaattaagttgcaattttattggcgttcaa |
40637690 |
T |
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| Q |
241 |
ggcaaaagattctacttttgcttttgattactatgtctggtggcttaatccctattgtgcatggg-------actcgctacgtagcttttctccttttat |
333 |
Q |
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| T |
40637689 |
ggcaaaagattctacttttgcttttgattactatgtttggtggcttaatccctattgtgcatgggcctcgctactcgctacgtagcttttctccttttat |
40637590 |
T |
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| Q |
334 |
tctctctattccttagacatattctttgtggtgactttgcaattaact |
381 |
Q |
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| T |
40637589 |
tctctctattccttagacatattctttgtggtgactttgcaattaact |
40637542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 14068731 - 14068651
Alignment:
| Q |
105 |
cttttatgcatatgatttggttgttttgtgtttggataatatggaaagaaaggaaatagaagaattttccacaacaaagaag |
186 |
Q |
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| T |
14068731 |
cttttatgcatctgatttggttaccttgtgtttggacaatatggaaggaaatg-aataatagaattttcaacaacaaagaag |
14068651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 321
Target Start/End: Complemental strand, 19335137 - 19334895
Alignment:
| Q |
80 |
ggtggaattcatagatcttctaagtcttttatgcatatgatttggttgttttgtgtttggataatatggaaagaaaggaaatagaagaattttccacaac |
179 |
Q |
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| T |
19335137 |
ggtggtattcaaagatcttttaagtcttttatgcatttgatttggttgtcttgtgttcgggcaatatggaaggaaa-gtaataacaaaattttcgacaac |
19335039 |
T |
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| Q |
180 |
aaagaagctaagctatccc----aattgttagataaaattaagttgcaattttatt-agcgttgaaggcaaaagattctacttttgcttttgattactat |
274 |
Q |
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| T |
19335038 |
aaaaaagctcaactgcccccatttattattagataaaattaagttgcaatttttttaatggttgaagacaaa--attctatttttgttttcaattatcat |
19334941 |
T |
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| Q |
275 |
gtctggtggcttaatccctattgtgcatgggactcgctacgtagctt |
321 |
Q |
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| T |
19334940 |
gttcggcggcttaa-ccctattgtgcatgagactcactatgtagctt |
19334895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 103 - 231
Target Start/End: Original strand, 496855 - 496980
Alignment:
| Q |
103 |
gtcttttatgcatatgatttggttgttttgtgtttggataatatggaaagaaaggaaatagaagaattttccacaacaaagaagctaagctatcccaatt |
202 |
Q |
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| T |
496855 |
gtcttttatgcatctgatttgtttgtcttgtgtttggacaatatgg-aagaaa--aaatagtataattttcgacaataaagaagctcagctgcctcaatt |
496951 |
T |
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| Q |
203 |
gttagataaaattaagttgcaattttatt |
231 |
Q |
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| T |
496952 |
gttcgataaaattaagctacaatcttatt |
496980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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