View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_3 (Length: 611)
Name: NF3097_low_3
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 335 - 611
Target Start/End: Complemental strand, 36356896 - 36356620
Alignment:
| Q |
335 |
tcaccttcaatttcacaacagcatttcattcatcaacacatgatcaaacaaacattgtaaaaatgatgaaagaaaacattaacataccgaatttgcaagc |
434 |
Q |
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| T |
36356896 |
tcaccttcaatttcacaacagcatttcattcatcaacacatgatcaaacaaacattgtaaaaatgatgaaagaaaacattaacataccgaatttgcaagc |
36356797 |
T |
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| Q |
435 |
ttgtaagaggaaaaacgcagcgttcattgtgacatttccccatctagaaaaccaacaacaacctcaaaacctttcttagtatcaacaaaacctgttccaa |
534 |
Q |
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| T |
36356796 |
ttgtaagaggaaaaacgcagcgttcattgtgacatttccccatctagagaaccaacaacaacctcaaaacctttcttagtatcaacaaaacctgttccaa |
36356697 |
T |
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| Q |
535 |
atccctcaaaagaattatatnnnnnnncagaaagaatcactctatacaacaatgcattgattcattcacggaattct |
611 |
Q |
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| T |
36356696 |
atccctcaaaagaattatataaaaaaatagaaagaatcactctatacaacaatgcattgattcattcacggaattct |
36356620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 36357230 - 36356954
Alignment:
| Q |
11 |
cacagaaccaagttcatcaatgaaacaaaacccctctcaatttcacatctcagnnnnnnnnnn----------gttaaccctccagttctcaggtggaat |
100 |
Q |
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| T |
36357230 |
cacagaaccaagttcatcaatgaaacaaaacccctctcaatttcacatctcagttttttttgtttttctttttgttaaccctccagttctcaggtggaat |
36357131 |
T |
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| Q |
101 |
gagaccctagtattccagagttcgaccaggaggtacaaagtctaaccgacgattgttccacccaggaatcaaactctgttttttccatgattacatctca |
200 |
Q |
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| T |
36357130 |
gagaccctagtattccagagttcgaccagaaggtacaaagtctaaccgacgattgttccacccaggaatcaaactctgtttttcccatgattacatctca |
36357031 |
T |
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| Q |
201 |
aagtttttgtttttcaaacaaataattaaacaaatacatgatcatccaataacatctaaccctattaaggttataac |
277 |
Q |
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| T |
36357030 |
aagttttttttttttaaacaaataattaaacaaatgcatgatcatccaataacatctaaccctattaaggttataac |
36356954 |
T |
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