View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_35 (Length: 383)
Name: NF3097_low_35
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 53613724 - 53614106
Alignment:
| Q |
1 |
atgaacttggtttaataataaagcaaaataaaaggaaaaaagggagaatatgtgatgataaaatgagtatgacctcagctgatatgtcaaagtatgatct |
100 |
Q |
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| T |
53613724 |
atgaacttggtttaataataaagcaaaataaaaggaaaaaagggagaatttgtgatgataaaatgagtatgacctcagctgatatgtcaaagtatgatct |
53613823 |
T |
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| Q |
101 |
agaacacctcgtcattgtctctttcgagtgcattttcatctgatatgaagagtaaaagttcatttgtgttgccagactctagaaaaggtaaatattttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53613824 |
agaacacctcgtcattgtctctttcgagtgcattttcatctgatattaagagtaaaagttcatttgtgttgccagactctagaaaaggttaatattttca |
53613923 |
T |
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| Q |
201 |
tcaagcatttaaaaatcaaattataagcactgttttagaccttaaagttgttcannnnnnnnactgacagtctaacatctgctgcagcagcttctatttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53613924 |
tcaagcatttaaaaatcaaattataagcactgttttagaccttaaagttgttcattttttttactgacagtctaacatctgctgcagcagcttctatttt |
53614023 |
T |
|
| Q |
301 |
ttcgacggtttcagtgattgtatgttgggatccaagccttgttgtctgcttcatgtgatcctaaacatcaaactcataacatc |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53614024 |
ttcgacggtttcagtgattgtatgttgggatccaagccttgttgtctgcttcatgtgatcctaaacatcaaactcataacatc |
53614106 |
T |
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