View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3097_low_4 (Length: 543)

Name: NF3097_low_4
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3097_low_4
NF3097_low_4
[»] chr1 (1 HSPs)
chr1 (24-540)||(22512035-22512552)


Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 24 - 540
Target Start/End: Complemental strand, 22512552 - 22512035
Alignment:
Q  24 cttctctgtcataagaccgctcaaactcatcacactgaaatcaccttcgtcctcattttcttcctccattgcagctactaaagcttgagcctcaacctcc 123  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22512552 cttctctgtcataagaccgctcaaactcatcacactcaaatcaccttcgtcctcattttcttcctccgttgcagctactaaagcttgagcctcaacctcc 22512453  T
Q  124 tcttcgtcgtcttcctctgtcaccataatgagtaactgccggtccgggcactggtgacggggg-tgagagttgccacctcaccggaaacacagtccacgt 222  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  22512452 tcttcgtcgtcttcctctgtcaccataatgcgtaactgccggtccgggcactggtgacggggggtgagagttgccaccgcaccggaaacacagtccacgt 22512353  T
Q  223 ctttgaaacactcccacgttaggtttccttcatcattggttaacgccttgaagaagtgtatggtcgaaccctctatacataattgtgctaaattcacctt 322  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512352 ctttgaaacgctcccacgttaggtttccttcatcattggttaacgccttgaagaagtgtatggtcgaaccctctatacataattgtgctaaattcacctt 22512253  T
Q  323 caattcttaattggtattttgcacgcgaaaatagatcttggcgcgagtgatccacccagctgggtcatcgccggtgaacatagacaattccactttcttt 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||     
T  22512252 caattcttaattggtattttgcacgcgaaaatagatcttggcgcgagtgatccacccagctgggtcatcgccggcgaacataggcaattccactttcttc 22512153  T
Q  423 acaaatctgcggaattcttccaagttgtttccggtgaatgatttcttcatcttggttttatcatcactgacgtcacccatgtccttttccttcactacag 522  Q
    ||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22512152 acagatctgctgaattcttccaagttgtttccggtgaacgatttcttcatctcggttttatcatcactgacgtcacccatgtccttttccttcactacag 22512053  T
Q  523 acttccctttgctactcc 540  Q
    ||||||||| ||||||||    
T  22512052 acttcccttagctactcc 22512035  T

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