View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3097_low_40 (Length: 349)

Name: NF3097_low_40
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3097_low_40
NF3097_low_40
[»] chr6 (5 HSPs)
chr6 (18-341)||(33908448-33908771)
chr6 (61-221)||(9627131-9627282)
chr6 (61-214)||(1415512-1415672)
chr6 (125-226)||(12155378-12155477)
chr6 (61-112)||(12155947-12155998)
[»] chr8 (4 HSPs)
chr8 (61-227)||(14958017-14958190)
chr8 (148-228)||(9293213-9293293)
chr8 (126-199)||(15292570-15292642)
chr8 (126-199)||(15472939-15473011)
[»] chr5 (4 HSPs)
chr5 (61-226)||(7237052-7237224)
chr5 (61-215)||(41715046-41715205)
chr5 (124-221)||(38755696-38755790)
chr5 (124-176)||(40768521-40768572)
[»] chr2 (3 HSPs)
chr2 (131-215)||(38288436-38288520)
chr2 (61-215)||(31395153-31395308)
chr2 (124-177)||(15358850-15358903)
[»] chr3 (5 HSPs)
chr3 (124-208)||(8543102-8543187)
chr3 (129-215)||(11630097-11630184)
chr3 (142-208)||(8541448-8541515)
chr3 (134-177)||(43361690-43361733)
chr3 (125-177)||(29794574-29794626)
[»] chr1 (3 HSPs)
chr1 (155-215)||(28666876-28666936)
chr1 (61-199)||(6397669-6397811)
chr1 (133-226)||(7440913-7441006)
[»] chr4 (2 HSPs)
chr4 (130-210)||(865245-865325)
chr4 (85-121)||(9838605-9838641)
[»] scaffold0027 (1 HSPs)
scaffold0027 (149-228)||(43598-43677)
[»] scaffold0035 (1 HSPs)
scaffold0035 (61-218)||(24414-24577)
[»] chr7 (1 HSPs)
chr7 (164-215)||(15077105-15077156)


Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 33908771 - 33908448
Alignment:
Q  18 catatatacaagacactgaagaaggtaaggttcagggctaatattgtaacactgaaaccctaattcctatcacagtaatagaaacggaactatagcagct 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33908771 catatatacaagacactgaagaaggtaaggttcagggataatattgtaacactgaaaccctaattcctatcacagtaatagaaacggaactatagcagct 33908672  T
Q  118 ctatagggtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgct 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33908671 ctatagggtaggcacaattggtcgaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgct 33908572  T
Q  218 gttcgaacaaatacaaatagnnnnnnntccggagaaaccaaaactcgtgcaaaaattcaaacgtacctgataagttattcataaagaccttaaaatctat 317  Q
    ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  33908571 gttcgaacaaatacaaatagaaaaaaatccggagaaaccaaaactcgtgcaaaaattcaaatatacctgataagttattcataaagaccttaaaatctat 33908472  T
Q  318 cagagatggaagttgacctatgct 341  Q
    ||||||||||||||||||||||||    
T  33908471 cagagatggaagttgacctatgct 33908448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 9627282 - 9627131
Alignment:
Q  61 ttgtaacactgaaaccctaattcctatcacagtaatagaaacggaactatagcagctctatagggtaggcacaattggtcaaactgcgttaacaaatatc 160  Q
    ||||||||||||||||||||||| ||||||||| |||||||| |||||||||| |||         || |||||||||   ||||| |||||||||||||    
T  9627282 ttgtaacactgaaaccctaattcttatcacagtgatagaaacagaactatagctgct---------agacacaattggctgaactgggttaacaaatatc 9627192  T
Q  161 atgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgttc 221  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||| ||||||| |||||    
T  9627191 atgtgttcattgtgtttctctttcattctcttatttaatcttttgtttctagttgttgttc 9627131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 214
Target Start/End: Original strand, 1415512 - 1415672
Alignment:
Q  61 ttgtaacactgaaaccctaattcctatcacagtaatagaaacggaactatagcagctctata-------gggtaggcacaattggtcaaactgcgttaac 153  Q
    |||||||| |||||||||||||| ||||||| |||||||||| |||||||||| ||||||||        ||||| ||||||||| | ||||||||||||    
T  1415512 ttgtaacattgaaaccctaattcttatcacaataatagaaacagaactatagctgctctataatcgtagaggtagccacaattggccgaactgcgttaac 1415611  T
Q  154 aaatatcatgtgttcattgtc-tttctctttcgttctcttatttaatattttgttactagtt 214  Q
    || |||| ||| || |||||| ||||||||||||||||||| ||||| |||||||| |||||    
T  1415612 aagtatcgtgtatttattgtcttttctctttcgttctctta-ttaatcttttgttattagtt 1415672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 12155477 - 12155378
Alignment:
Q  125 gtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgttcgaa 224  Q
    |||||||||||| | | ||||| ||||| ||||||  ||||||||||||||||||||||||||||||||  |||| ||||||||||||||| ||||| ||    
T  12155477 gtaggcacaatttgccgaactgtgttaaaaaatattgtgtgttcattgtctttctctttcgttctctta--taattttttgttactagttgttgttctaa 12155380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 12155998 - 12155947
Alignment:
Q  61 ttgtaacactgaaaccctaattcctatcacagtaatagaaacggaactatag 112  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  12155998 ttgtaacactgaaatcctaattcttatcacagtaatagaaacggaactatag 12155947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 61 - 227
Target Start/End: Original strand, 14958017 - 14958190
Alignment:
Q  61 ttgtaacactgaaaccctaattcctatcacagtaatagaaacggaactatagcagctctatag-------ggtaggcacaattggtcaaactgcgttaac 153  Q
    ||||||||||||||||||||||| | ||||||||||||||||  ||||||||| ||||||||        ||||||||||||||| | ||||| ||||||    
T  14958017 ttgtaacactgaaaccctaattcttctcacagtaatagaaacataactatagctgctctataatcgcagaggtaggcacaattggccgaactgtgttaac 14958116  T
Q  154 aaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgttcgaacaa 227  Q
    ||||||| | ||||||||||||| ||||||||||||||| |||||| ||||||||||||||| ||||| |||||    
T  14958117 aaatatcctatgttcattgtcttcctctttcgttctcttgtttaatcttttgttactagttgttgttctaacaa 14958190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 9293293 - 9293213
Alignment:
Q  148 gttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgttcgaacaaa 228  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||| |||||||||  |||| ||||| ||||||    
T  9293293 gttaacaaatattgtgtgttcattgtctttctcttttgttctcttatttaatcttttgttaccggttgatgttctaacaaa 9293213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 15292642 - 15292570
Alignment:
Q  126 taggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaat 199  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||||  ||||  ||||||||||||||||||||    
T  15292642 taggcacaattggtcgaactgcgttaac-aatatcgtgtgttcattaacttttactttcgttctcttatttaat 15292570  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 15473011 - 15472939
Alignment:
Q  126 taggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaat 199  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||||  ||||  ||||||||||||||||||||    
T  15473011 taggcacaattggtcgaactgcgttaac-aatatcgtgtgttcattaacttttactttcgttctcttatttaat 15472939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 61 - 226
Target Start/End: Complemental strand, 7237224 - 7237052
Alignment:
Q  61 ttgtaacactgaaaccctaattcctatcacagtaatagaaacggaactatagcagctctatag-------ggtaggcacaattggtcaaactgcgttaac 153  Q
    ||||||||| ||||||||||||| ||||||||||||| ||| |||| |||||| |||||||||       ||||| || |||||| | ||||||| ||||    
T  7237224 ttgtaacaccgaaaccctaattcttatcacagtaataaaaatggaattatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaac 7237125  T
Q  154 aaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgttcgaaca 226  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||| ||| |||||| ||||    
T  7237124 aaatatcgtgtgttcattgtctttttctttcgttctcttatttaatcttttgttactggttactgttctaaca 7237052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 215
Target Start/End: Original strand, 41715046 - 41715205
Alignment:
Q  61 ttgtaacactgaaaccctaattcctatcacagtaatagaaacggaactatagcagctctatag-------ggtaggcacaattggtcaaactgcgttaac 153  Q
    ||||||||||||| ||||| |||  |||||||||||||||||||||||||||  ||||||| |       ||||||||||||||  | |||||| |||||    
T  41715046 ttgtaacactgaaccccta-ttctcatcacagtaatagaaacggaactatagatgctctatcgtcgtagaggtaggcacaattgtccgaactgcattaac 41715144  T
Q  154 aaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttg 215  Q
    ||  ||| | |||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  41715145 aag-atcgtatgttaattgtctttctctttcgttctcttatttaatcttttgttactagttg 41715205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 38755696 - 38755790
Alignment:
Q  124 ggtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgttc 221  Q
    ||||||||||||||  |||||||  |||||||||||  |||||||||   |||||||||||||||||||||||||| ||||||||||||||| |||||    
T  38755696 ggtaggcacaattgaccaaactgtattaacaaatatggtgtgttcat---ctttctctttcgttctcttatttaatcttttgttactagttgttgttc 38755790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 40768572 - 40768521
Alignment:
Q  124 ggtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctt 176  Q
    ||||||||| |||||||||||||||| |||||| ||||| | |||||||||||    
T  40768572 ggtaggcaccattggtcaaactgcgtaaacaaaaatcatat-ttcattgtctt 40768521  T

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Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 38288520 - 38288436
Alignment:
Q  131 acaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttg 215  Q
    |||||||| | |||| ||||||||||||||||||||| ||||||||||||||||  ||||||||||||| |||||||||||||||    
T  38288520 acaattggccgaactacgttaacaaatatcatgtgttaattgtctttctctttcaatctcttatttaatcttttgttactagttg 38288436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 215
Target Start/End: Complemental strand, 31395308 - 31395153
Alignment:
Q  61 ttgtaacactgaaaccctaattcctatcacagtaatagaaacggaactatagcagctctatag-----ggtaggcacaattggtcaaactgcgttaacaa 155  Q
    |||||||||||||||||||||    ||| |||||||| |||||||| |||||| ||| |||||     | || |||| ||||| | | ||| ||||||||    
T  31395308 ttgtaacactgaaaccctaatc---atcgcagtaatataaacggaattatagctgctttatagccatagataagcaccattggacgagctgtgttaacaa 31395212  T
Q  156 atatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttg 215  Q
    ||||||||||||||||||||||  |||||||| |||||||| ||||||||||||||||||    
T  31395211 atatcatgtgttcattgtcttttactttcgttttcttattt-atattttgttactagttg 31395153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 15358903 - 15358850
Alignment:
Q  124 ggtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtcttt 177  Q
    ||||||||  ||| ||||||||||||||||||| ||| ||||||||||| ||||    
T  15358903 ggtaggcatcattagtcaaactgcgttaacaaagatcttgtgttcattgccttt 15358850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 8543102 - 8543187
Alignment:
Q  124 ggtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctct-ttcgttctcttatttaatattttgtta 208  Q
    ||||||||||||||| | ||||||||||||||||||| | |||||||||||||||| | |||||||||||||||||| ||||||||    
T  8543102 ggtaggcacaattggccgaactgcgttaacaaatatcgtatgttcattgtctttctttcttcgttctcttatttaatcttttgtta 8543187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 11630097 - 11630184
Alignment:
Q  129 gcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaat-attttgttactagttg 215  Q
    |||||||||| ||||||| ||||||||||||| | || ||||||||||| ||||| |||||||||||||||  |||||||||||||||    
T  11630097 gcacaattggccaaactgtgttaacaaatatcgtatgatcattgtctttttcttttgttctcttatttaatctttttgttactagttg 11630184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 8541448 - 8541515
Alignment:
Q  142 aactgcgttaacaaatatcatgtgttcattgtctttctct-ttcgttctcttatttaatattttgtta 208  Q
    ||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||| ||||||||    
T  8541448 aactgcgttaacaaatatcgtgtgtgcgttgtctttctctcttcgttctcttatttaatcttttgtta 8541515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 43361690 - 43361733
Alignment:
Q  134 attggtcaaactgcgttaacaaatatcatgtgttcattgtcttt 177  Q
    ||||| |||||| |||||||||||||||||||||||||||||||    
T  43361690 attggccaaactacgttaacaaatatcatgtgttcattgtcttt 43361733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 29794626 - 29794574
Alignment:
Q  125 gtaggcacaattggtcaaactgcgttaacaaatatcatgtgttcattgtcttt 177  Q
    ||||||||||||| || || |||||||||||||||| |||||  |||||||||    
T  29794626 gtaggcacaattgatcgaattgcgttaacaaatatcgtgtgtctattgtcttt 29794574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 28666876 - 28666936
Alignment:
Q  155 aatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttg 215  Q
    |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28666876 aatatcgtgcgttcattgtctttctctttcgttctcttatttaatcttttgttactagttg 28666936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 199
Target Start/End: Complemental strand, 6397811 - 6397669
Alignment:
Q  61 ttgtaacactgaaaccctaattcctatcacagtaatagaaacggaactatagcagctctatag-------ggtaggcacaattggtcaaactgcgttaac 153  Q
    |||||||||||||||| || |||  |||||||||||||||||  ||||||||| |||||||||       ||||||||||| ||| | || |||||||||    
T  6397811 ttgtaacactgaaaccttagttc--atcacagtaatagaaacaaaactatagctgctctatagtcacagaggtaggcacaa-tggccgaagtgcgttaac 6397715  T
Q  154 aaatatcatgtgttcattgtctttctctttcgttctcttatttaat 199  Q
    ||||||  | ||||| |||| |||  |||| |||||||||||||||    
T  6397714 aaatattgtatgttcgttgtgttttactttggttctcttatttaat 6397669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 7440913 - 7441006
Alignment:
Q  133 aattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgttcgaaca 226  Q
    |||||| | ||||||||||||||||||| | | |  ||||| |||  |||||||||||||||||||| || ||||||||| || ||||| ||||    
T  7440913 aattggccgaactgcgttaacaaatatcgtatatatattgttttttactttcgttctcttatttaatcttatgttactagatgttgttctaaca 7441006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 865325 - 865245
Alignment:
Q  130 cacaattggtcaaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttact 210  Q
    |||||||| || |||  |||||||||||||| ||| |||||| |||||  |||||||||||||||||||| ||||||||||    
T  865325 cacaattgatcgaaccacgttaacaaatatcgtgttttcattttcttttactttcgttctcttatttaattttttgttact 865245  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 9838605 - 9838641
Alignment:
Q  85 tatcacagtaatagaaacggaactatagcagctctat 121  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  9838605 tatcacagtaataaaaacggaactatagctgctctat 9838641  T

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Target: scaffold0027 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 43677 - 43598
Alignment:
Q  149 ttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgttcgaacaaa 228  Q
    ||||||||||| ||||||| ||| ||||||||||| |||||||||||||||  |||  |||||||||||| || ||||||    
T  43677 ttaacaaatattatgtgtttattatctttctcttttgttctcttatttaatcattttatactagttgctgctctaacaaa 43598  T

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Target: scaffold0035 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 24414 - 24577
Alignment:
Q  61 ttgtaacactgaaaccctaattcctatcacagtaatagaaacggaactatagcagctctatag-------ggtaggcacaattggtcaaactgcgttaac 153  Q
    ||||||||| ||||| |||| || |||||| |||||||||||||||||| ||| |||||||||       |||||||| |||||| | ||   | |||||    
T  24414 ttgtaacaccgaaactctaagtcttatcactgtaatagaaacggaactacagctgctctatagtcgcagaggtaggcataattggccgaataactttaac 24513  T
Q  154 aaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctg 218  Q
     || ||| ||| ||||||||||||  |||| ||||||||||||||| || |||||| ||||||||    
T  24514 -aagatcgtgttttcattgtcttttacttttgttctcttatttaatcttctgttaccagttgctg 24577  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 15077156 - 15077105
Alignment:
Q  164 tgttcattgtctttctctttcgttctcttatttaatattttgttactagttg 215  Q
    |||||||||| |||  |||||||||||||||||||| | |||||||||||||    
T  15077156 tgttcattgttttttactttcgttctcttatttaatctgttgttactagttg 15077105  T

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