View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3097_low_42 (Length: 343)
Name: NF3097_low_42
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 39779951 - 39779634
Alignment:
| Q |
1 |
agaaaaaatattgagaaggacattcacaatctctcttttaaaagttaatnnnnnnnngttgaaagacgtgatttagacggtgtttcaaactgagaaggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39779951 |
agaaaaaatattgagaaggacattcacaatct-tcttttaaaagctaataaaaaaaagttgaaagacgtgatttagacggtgtttcaaactgagaaggac |
39779853 |
T |
|
| Q |
101 |
attcacaattttcttttgaatgcatggtaaatctcaaatttaccattcctttgagagaacagagtaattaatctataagtgaacatgctagcgcaacttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39779852 |
attcacaattttcttttgaatgcatggtaaatctcaaatttaccattcctttgagagaacagagtaattaatctataagtgaacatgttagcgcaacttg |
39779753 |
T |
|
| Q |
201 |
ttttatttcttgagttctaagtaatctaaagatgatagatagagatgaataaaagtaatgaatgctttgatcagaggcctatctgaccattgcccagtct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39779752 |
ttttatttcttgagttctaagtaatctaaagatgatcgatagagatgaataaaagtaatgaatgctttgatcagaggactatctgaccattgcccagtct |
39779653 |
T |
|
| Q |
301 |
cattaccatcgatgaggag |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39779652 |
cattaccatcgatgaggag |
39779634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University