View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_47 (Length: 317)
Name: NF3097_low_47
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 41552452 - 41552761
Alignment:
| Q |
1 |
accacaacaggttaatctatgagaccaatttatggttatcttaagcagatatttcttgtttcagtttgttgtacttcacatatttgcttgatatataagg |
100 |
Q |
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| T |
41552452 |
accacaacaggttaatctatgagaccaatttatggttatcttaagcagatatttcttgtttcagtttgttgtacttcacatatttgcttgatatataagg |
41552551 |
T |
|
| Q |
101 |
atgttaattggcggtttcaacatatacggcttttgtttacaatattactttgactgattggacttggccgaagacattttatttcagaaacttcttgtat |
200 |
Q |
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| T |
41552552 |
atgttaattggcggtttcaacatatacggcttttgtttacaatattactttgactgattggacttggccgaagacattttatttcagaaacttcttgtat |
41552651 |
T |
|
| Q |
201 |
tatgtttttgttgcattttggtattaagttgagttgttctgtttaaccttaaatactcctttctaaggtccaggcaaaaggaagcggaactcatgcccta |
300 |
Q |
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| T |
41552652 |
tatgtttttgttgcattttggtattaagttgagttgttttgtttaaccttaaatactcctttctaaggtccaggcaaaaggaagcggaactcatgcccta |
41552751 |
T |
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| Q |
301 |
gttcatctca |
310 |
Q |
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||| |||||| |
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| T |
41552752 |
gtttatctca |
41552761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 273
Target Start/End: Original strand, 34255918 - 34256089
Alignment:
| Q |
103 |
gttaattggcggtttcaacatatacggcttttgtttacaatattactttgactgattggacttggccgaagacattttatttcagaaacttc-ttgtatt |
201 |
Q |
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| T |
34255918 |
gttaattggcggtttcgacatatacggttttagtttataattttgctt-gacttgttggacatagcagaatacatttcatttcagtaacttcattgtatt |
34256016 |
T |
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| Q |
202 |
atgtttttgttgcattttggtattaagttgagt-tgttctgtttaaccttaaatactcctttctaaggtccag |
273 |
Q |
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| T |
34256017 |
atgtttatgttgcattttcgtattaagttgaatatgttttgtttaactttaaattcttctttataaggtccag |
34256089 |
T |
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