View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3097_low_48 (Length: 315)

Name: NF3097_low_48
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3097_low_48
NF3097_low_48
[»] chr4 (4 HSPs)
chr4 (25-114)||(19240743-19240832)
chr4 (262-305)||(52327096-52327139)
chr4 (25-79)||(32767590-32767644)
chr4 (59-116)||(41361229-41361286)
[»] chr7 (3 HSPs)
chr7 (25-113)||(7505211-7505299)
chr7 (263-305)||(48252975-48253017)
chr7 (25-113)||(31272163-31272251)
[»] scaffold1449 (1 HSPs)
scaffold1449 (47-113)||(1611-1677)
[»] chr6 (3 HSPs)
chr6 (25-113)||(20139188-20139276)
chr6 (25-113)||(22193593-22193681)
chr6 (22-114)||(31655572-31655664)
[»] chr3 (2 HSPs)
chr3 (25-113)||(2868979-2869067)
chr3 (25-113)||(6888768-6888856)
[»] chr5 (2 HSPs)
chr5 (59-114)||(37206114-37206169)
chr5 (58-118)||(35038827-35038887)
[»] chr2 (2 HSPs)
chr2 (47-113)||(17088285-17088352)
chr2 (25-79)||(15614200-15614254)
[»] chr8 (1 HSPs)
chr8 (82-116)||(42935899-42935933)
[»] chr1 (1 HSPs)
chr1 (74-114)||(28199180-28199220)


Alignment Details
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 19240832 - 19240743
Alignment:
Q  25 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctctac 114  Q
    ||||| ||||||||||| ||| |||||| ||| |||||||||| ||||||||||| |||||||    |||| ||||||||||||||||||    
T  19240832 attcgggctgcaattattaggcccaaaccctacattttattcgggctttcgggccggtccatatgacccggcccgttttgacagctctac 19240743  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 305
Target Start/End: Complemental strand, 52327139 - 52327096
Alignment:
Q  262 atcttagagcacccacatccatgccacccttatgagtagtataa 305  Q
    |||| |||||| ||||||||||||||||| ||||||||||||||    
T  52327139 atctaagagcagccacatccatgccacccatatgagtagtataa 52327096  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 32767644 - 32767590
Alignment:
Q  25 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggcc 79  Q
    ||||| ||||||||||| ||| |||| | |||||||||||||| |||||||||||    
T  32767644 attcgggctgcaattattaggcccaagccctatattttattcgggctttcgggcc 32767590  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 41361286 - 41361229
Alignment:
Q  59 ttttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctctacat 116  Q
    ||||||||| ||||||||||| | ||||| ||||  | ||||||||||||||||||||    
T  41361286 ttttattcgggctttcgggccggcccatataggctagcccgttttgacagctctacat 41361229  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 7505299 - 7505211
Alignment:
Q  25 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctcta 113  Q
    ||||| ||||||||||| ||| |||| | ||| |||||||||  ||||||||||| | |||||| |||||| |||||||||||||||||    
T  7505299 attcgggctgcaattattaggcccaagccctacattttattcaggctttcgggccggcccatacgggccggcccgttttgacagctcta 7505211  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 48253017 - 48252975
Alignment:
Q  263 tcttagagcacccacatccatgccacccttatgagtagtataa 305  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  48253017 tcttagagcacccacatccatgccacccatatgagtagtataa 48252975  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 31272163 - 31272251
Alignment:
Q  25 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctcta 113  Q
    ||||| ||||||||||| ||| |||| | ||| |||||||||| ||||| ||| | | |||||| | |||  |||||||||||||||||    
T  31272163 attcgtgctgcaattattaggcccaagccctacattttattcgggcttttgggtcggcccatacggcccgacccgttttgacagctcta 31272251  T

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Target: scaffold1449 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1449
Description:

Target: scaffold1449; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 1611 - 1677
Alignment:
Q  47 ccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctcta 113  Q
    |||||| ||| |||||||||| ||||||||||| | |||||| |||||| |||||||||||||||||    
T  1611 ccaaaccctacattttattcgggctttcgggccggcccatacgggccggcccgttttgacagctcta 1677  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 20139276 - 20139188
Alignment:
Q  25 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctcta 113  Q
    ||||| ||||||||||| ||| |||| | |||  ||||||||| ||||||||||| | |||||| ||| || |||||||||||||||||    
T  20139276 attcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccatacgggcgggcccgttttgacagctcta 20139188  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 22193593 - 22193681
Alignment:
Q  25 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctcta 113  Q
    ||||| ||||||||||| ||| |||| | |||  ||||||||| ||||||||||| | |||||| ||| || |||||||||||||||||    
T  22193593 attcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccatacgggcgggcccgttttgacagctcta 22193681  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 31655572 - 31655664
Alignment:
Q  22 tttattcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctctac 114  Q
    |||||||| |||| |||| | ||| |||||| |||| ||||||||| ||||||||||  | |||| | | |||| ||||||||||||||||||    
T  31655572 tttattcgggctgtaatttttaggcccaaaccctatgttttattcgggctttcgggctggcccattcggcccggcccgttttgacagctctac 31655664  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 2869067 - 2868979
Alignment:
Q  25 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctcta 113  Q
    ||||| ||||||||| | ||| |||| |||||  ||||||||| ||||||||||||| |||||| | |||  || ||||||||||||||    
T  2869067 attcgggctgcaattttcaggcccaagctctacgttttattcgggctttcgggccagcccatacggcccgaccccttttgacagctcta 2868979  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 6888768 - 6888856
Alignment:
Q  25 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctcta 113  Q
    ||||| ||| ||||||| ||| |||| | ||||||||||| || ||||||||||| | |||||| |||||| || |||||||| |||||    
T  6888768 attcgggctccaattattaggcccaagccctatattttatgcgggctttcgggccggcccatacgggccggcccattttgacaactcta 6888856  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 37206114 - 37206169
Alignment:
Q  59 ttttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctctac 114  Q
    ||||||||| ||||||||||| | | |||| |||||| ||||||||||||||||||    
T  37206114 ttttattcgggctttcgggccggcctatacgggccggcccgttttgacagctctac 37206169  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 35038827 - 35038887
Alignment:
Q  58 attttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctctacatac 118  Q
    |||||||||| ||||||||||| | || ||| | |||| || |||||||||||||||||||    
T  35038827 attttattcgggctttcgggccggcccttacggcccggcccattttgacagctctacatac 35038887  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 17088285 - 17088352
Alignment:
Q  47 ccaaactctatattttattcgcgctttcgggccagtcc-atacaggccggtccgttttgacagctcta 113  Q
    |||||| ||| |||||||||| ||||||||||| | || |||| |||||| |||||||||||||||||    
T  17088285 ccaaaccctacattttattcgggctttcgggccggcccaatacgggccggcccgttttgacagctcta 17088352  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 15614200 - 15614254
Alignment:
Q  25 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggcc 79  Q
    ||||| ||||||||||| ||| |||| | |||||||||||||| |||||||||||    
T  15614200 attcgggctgcaattattaggcccaagccctatattttattcgggctttcgggcc 15614254  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 116
Target Start/End: Original strand, 42935899 - 42935933
Alignment:
Q  82 tccatacaggccggtccgttttgacagctctacat 116  Q
    ||||||| |||||||||||||||||||||||||||    
T  42935899 tccatacgggccggtccgttttgacagctctacat 42935933  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 28199220 - 28199180
Alignment:
Q  74 cgggccagtccatacaggccggtccgttttgacagctctac 114  Q
    |||||| | ||||||||||||| ||||||||||||||||||    
T  28199220 cgggccggcccatacaggccggcccgttttgacagctctac 28199180  T

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