View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3097_low_49 (Length: 311)

Name: NF3097_low_49
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3097_low_49
NF3097_low_49
[»] chr7 (1 HSPs)
chr7 (1-295)||(47428342-47428636)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 47428342 - 47428636
Alignment:
Q  1 aagactttgaaattgtatgagccgctaccttgcccgttgttcttccacttgttagttttcggaagctccatctgcgcttcactaccatcttattactatt 100  Q
    ||||||| |||||| |||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47428342 aagacttggaaattttatgagctactaccttgcccgttgatcttccacttgttagttttcggaagctccatctgcgcttcactaccatcttattactatt 47428441  T
Q  101 actgctgctactactattaaccgtgtttgcggtcttattatcggggcagaatgtatcaatctgcttgaagttctcttcttttttccctagaagaaggttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47428442 actgctgctactactattaaccgtgtttgcggtcttattatcggggcagaatgtatcaatctgcttgaagttctcttcttttttccctagaagaaggttt 47428541  T
Q  201 ctaatccatttgcttgccttccccannnnnnnnccttctcaccttccaaaattctacttactggtttaataggacttagtaactaaacaggaaga 295  Q
    |||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47428542 ctaatccatttgcttgccttccccattttttttccttctcaccttccaaaattctacttactggtttaataggatttagtaactaaacaggaaga 47428636  T

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