View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_51 (Length: 307)
Name: NF3097_low_51
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 298
Target Start/End: Complemental strand, 53956015 - 53955732
Alignment:
| Q |
14 |
gacatgggccactaccatcaatcatatgctcaagatttctacttcttttgcaaaatatgagctccaattttactgaaataaccatgttattatgatcact |
113 |
Q |
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| T |
53956015 |
gacatgggccactaccatcaatcatatgctcaagatttctacttcttttgcaaaatatgagctccaattttactgaaataaccatgttattatgatcact |
53955916 |
T |
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| Q |
114 |
agtac-ttataacttatgtattcatttgcatctttaatcttatatatttgcaaaaactattattaaatgatgtattattcctattatgtattaaatttga |
212 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
53955915 |
agtactttataacttatgtattcatttgcatctttaatcttatatatttgcaaaaactattattaaattatgtattattcctat----tattaaatttga |
53955820 |
T |
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| Q |
213 |
acaatcagtgatctacctttcaagtaag--nnnnnnnnnnnttgttcacgttggagatcacattgactattgatatggacaaagtagt |
298 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53955819 |
acaatcagtgatctacctttcaagtaagaaaaaaaaaaaaattgttcacgttggagatcacattgactattgatatggacaaagtagt |
53955732 |
T |
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