View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3097_low_52 (Length: 305)

Name: NF3097_low_52
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3097_low_52
NF3097_low_52
[»] chr4 (19 HSPs)
chr4 (1-210)||(23868733-23868942)
chr4 (2-214)||(23408609-23408821)
chr4 (1-214)||(23402071-23402284)
chr4 (1-210)||(23415777-23415986)
chr4 (1-214)||(23453440-23453653)
chr4 (1-210)||(24307224-24307433)
chr4 (1-210)||(23885828-23886037)
chr4 (8-210)||(26832736-26832938)
chr4 (8-210)||(26434025-26434227)
chr4 (8-210)||(26435805-26436007)
chr4 (2-210)||(34662110-34662318)
chr4 (8-121)||(23451807-23451920)
chr4 (248-290)||(24307144-24307186)
chr4 (245-290)||(23401995-23402040)
chr4 (254-290)||(26832656-26832692)
chr4 (245-288)||(23408852-23408895)
chr4 (248-290)||(23416021-23416063)
chr4 (254-288)||(26433947-26433981)
chr4 (254-288)||(26435727-26435761)
[»] chr1 (5 HSPs)
chr1 (23-210)||(41670401-41670588)
chr1 (23-213)||(40795767-40795957)
chr1 (1-62)||(33216594-33216655)
chr1 (56-210)||(29391467-29391621)
chr1 (82-118)||(33216558-33216594)
[»] chr7 (3 HSPs)
chr7 (2-210)||(40180339-40180547)
chr7 (1-62)||(47317431-47317492)
chr7 (82-118)||(47317395-47317431)
[»] chr8 (1 HSPs)
chr8 (85-210)||(29684701-29684826)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 23868942 - 23868733
Alignment:
Q  1 accaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttc 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23868942 accaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttc 23868843  T
Q  101 tcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||    
T  23868842 tcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatct 23868743  T
Q  201 tgtatgtttc 210  Q
    ||||||||||    
T  23868742 tgtatgtttc 23868733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 214
Target Start/End: Original strand, 23408609 - 23408821
Alignment:
Q  2 ccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttct 101  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23408609 ccaggaagaacaagtctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttct 23408708  T
Q  102 cgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatctt 201  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  23408709 cgaagatatcattgatgaaactgttcatgatacccatcgctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaagatgtagatctt 23408808  T
Q  202 gtatgtttctaca 214  Q
    |||||||||||||    
T  23408809 gtatgtttctaca 23408821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 23402284 - 23402071
Alignment:
Q  1 accaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttc 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23402284 accaggaagaacaagcctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttc 23402185  T
Q  101 tcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatct 200  Q
    ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||    
T  23402184 tcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatct 23402085  T
Q  201 tgtatgtttctaca 214  Q
    ||||||||||||||    
T  23402084 tgtatgtttctaca 23402071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 23415777 - 23415986
Alignment:
Q  1 accaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23415777 accaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttc 23415876  T
Q  101 tcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatct 200  Q
    ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||    
T  23415877 tcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatct 23415976  T
Q  201 tgtatgtttc 210  Q
    ||||||||||    
T  23415977 tgtatgtttc 23415986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 23453440 - 23453653
Alignment:
Q  1 accaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttc 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23453440 accaggaagaacaagactgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttc 23453539  T
Q  101 tcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatct 200  Q
    ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||    
T  23453540 tcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacatgattcagaactttgaagatgtagatct 23453639  T
Q  201 tgtatgtttctaca 214  Q
    ||||||||||||||    
T  23453640 tgtatgtttctaca 23453653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 24307433 - 24307224
Alignment:
Q  1 accaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttc 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  24307433 accaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttc 24307334  T
Q  101 tcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||    
T  24307333 tcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatatagatct 24307234  T
Q  201 tgtatgtttc 210  Q
    ||||||||||    
T  24307233 tgtatgtttc 24307224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 23886037 - 23885828
Alignment:
Q  1 accaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttc 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23886037 accaggaagaacaagcctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttc 23885938  T
Q  101 tcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatct 200  Q
    ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||    
T  23885937 tcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatct 23885838  T
Q  201 tgtatgtttc 210  Q
    ||||||||||    
T  23885837 tgtatgtttc 23885828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 26832938 - 26832736
Alignment:
Q  8 agaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaaga 107  Q
    |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  26832938 agaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaaga 26832839  T
Q  108 tatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgt 207  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  26832838 tatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgt 26832739  T
Q  208 ttc 210  Q
    |||    
T  26832738 ttc 26832736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 26434227 - 26434025
Alignment:
Q  8 agaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaaga 107  Q
    |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  26434227 agaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaaga 26434128  T
Q  108 tatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgt 207  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||||    
T  26434127 tatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgt 26434028  T
Q  208 ttc 210  Q
    |||    
T  26434027 ttc 26434025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 26436007 - 26435805
Alignment:
Q  8 agaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaaga 107  Q
    |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  || ||||||||||    
T  26436007 agaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaaga 26435908  T
Q  108 tatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgt 207  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  26435907 tatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgt 26435808  T
Q  208 ttc 210  Q
    |||    
T  26435807 ttc 26435805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 34662110 - 34662318
Alignment:
Q  2 ccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttct 101  Q
    |||||||||||||| || || ||||||||||||||||| ||||| || || ||||||||||| || |  ||||||||||| ||||||||||| |||||||    
T  34662110 ccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttct 34662209  T
Q  102 cgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatctt 201  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||    
T  34662210 cgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatctt 34662309  T
Q  202 gtatgtttc 210  Q
    ||| |||||    
T  34662310 gtaggtttc 34662318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 23451807 - 23451920
Alignment:
Q  8 agaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaaga 107  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||| |||||||| ||||    
T  23451807 agaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattcttgagcgagcttctcaaaga 23451906  T
Q  108 tatcattgatgaaa 121  Q
    |||| |||||||||    
T  23451907 tatcgttgatgaaa 23451920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 248 - 290
Target Start/End: Complemental strand, 24307186 - 24307144
Alignment:
Q  248 gcagcggaaccaccttcctttggtagcttctttccggcctttg 290  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  24307186 gcagcggaaccaccttcctttggtagcttctttcctgcctttg 24307144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 23402040 - 23401995
Alignment:
Q  245 cctgcagcggaaccaccttcctttggtagcttctttccggcctttg 290  Q
    ||||| || ||||||||||||||||||||||||||||| |||||||    
T  23402040 cctgctgcagaaccaccttcctttggtagcttctttcctgcctttg 23401995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 26832692 - 26832656
Alignment:
Q  254 gaaccaccttcctttggtagcttctttccggcctttg 290  Q
    ||||||||||||||||| |||||||||||||||||||    
T  26832692 gaaccaccttcctttggaagcttctttccggcctttg 26832656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 23408852 - 23408895
Alignment:
Q  245 cctgcagcggaaccaccttcctttggtagcttctttccggcctt 288  Q
    ||||| || ||||||||||||||||||||||||||||| |||||    
T  23408852 cctgctgcagaaccaccttcctttggtagcttctttcctgcctt 23408895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 290
Target Start/End: Original strand, 23416021 - 23416063
Alignment:
Q  248 gcagcggaaccaccttcctttggtagcttctttccggcctttg 290  Q
    ||||| |||||||||||||||||||||||||| || |||||||    
T  23416021 gcagctgaaccaccttcctttggtagcttcttccctgcctttg 23416063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 26433981 - 26433947
Alignment:
Q  254 gaaccaccttcctttggtagcttctttccggcctt 288  Q
    ||||||||||||||||| |||||||||||||||||    
T  26433981 gaaccaccttcctttggaagcttctttccggcctt 26433947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 26435761 - 26435727
Alignment:
Q  254 gaaccaccttcctttggtagcttctttccggcctt 288  Q
    ||||||||||||||||| |||||||||||||||||    
T  26435761 gaaccaccttcctttggaagcttctttccggcctt 26435727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 41670588 - 41670401
Alignment:
Q  23 gcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaac 122  Q
    |||||||| || ||||  ||||||||||| |||||||||||||| |  ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |    
T  41670588 gcagtctgtatctcccgagaagtgattgtaggcttcttgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagc 41670489  T
Q  123 tgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 210  Q
    ||||||| || ||||| || |||||||||||||||||||| || ||||| || || || || ||||| |||||||||||||| |||||    
T  41670488 tgttcatgatccccatagccttgcttgagataccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttc 41670401  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 40795957 - 40795767
Alignment:
Q  23 gcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaac 122  Q
    ||||||||||| || |  || ||||| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||    
T  40795957 gcagtctgaatctcacgagaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaac 40795858  T
Q  123 tgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctac 213  Q
    ||||||| || ||||| || ||||| ||||| |||||||| || ||||| || || || || ||||| |||||||||||||| ||||||||    
T  40795857 tgttcatgatccccatagccttgctggagattccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctac 40795767  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 33216655 - 33216594
Alignment:
Q  1 accaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgt 62  Q
    |||| |||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||    
T  33216655 accaagaagaacaagtctgacagcagtttgaattttccttgaagtgattgttggcttcttgt 33216594  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 210
Target Start/End: Complemental strand, 29391621 - 29391467
Alignment:
Q  56 ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatac 155  Q
    ||||||||||||||||| | ||| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||||   || ||||    
T  29391621 ttcttgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatac 29391522  T
Q  156 caatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 210  Q
    | || || || ||||| ||||| || || ||||| ||||| ||||| || |||||    
T  29391521 ctatatcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttc 29391467  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
Q  82 tgattcttgagcaagcttctcgaagatatcattgatg 118  Q
    ||||||||||||||||||| |||||||||||||||||    
T  33216594 tgattcttgagcaagcttcacgaagatatcattgatg 33216558  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 40180339 - 40180547
Alignment:
Q  2 ccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttct 101  Q
    ||||||||||| | ||| || ||||| ||||| ||||| ||||| || || ||||||||||| || | ||| |  |  || ||||| ||||| || ||||    
T  40180339 ccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttcttgttatacctagccaaacgagacgattcctgagcgagtttct 40180438  T
Q  102 cgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatctt 201  Q
    | |||||||| || |||||||||||||| |||||||| || |||||||| | ||| || || || ||||| |||||||| || ||||| ||||| |||||    
T  40180439 caaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaaccttgaagatgtatatctt 40180538  T
Q  202 gtatgtttc 210  Q
    ||| |||||    
T  40180539 gtaggtttc 40180547  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 47317492 - 47317431
Alignment:
Q  1 accaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgt 62  Q
    ||||||||||| |||||||||  |||| ||||||||||||||||||||||||||||||||||    
T  47317492 accaggaagaataagtctgacaacagtttgaatttcccttgaagtgattgttggcttcttgt 47317431  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
Q  82 tgattcttgagcaagcttctcgaagatatcattgatg 118  Q
    ||||||||||||||||||| |||||||||||||||||    
T  47317431 tgattcttgagcaagcttcacgaagatatcattgatg 47317395  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 210
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
Q  85 ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtact 184  Q
    ||||||||| || ||||  |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| || ||     
T  29684826 ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc 29684727  T
Q  185 ttgaatatgtagatcttgtatgtttc 210  Q
    |||||||| || |||||||| |||||    
T  29684726 ttgaatatatatatcttgtaggtttc 29684701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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