View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_53 (Length: 305)
Name: NF3097_low_53
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 6187063 - 6187353
Alignment:
| Q |
1 |
tagatacctttagccgacgaccacttcgaaccaaatcaatttgaatgtcattgctaacttgagacaatttatcaaattgtttgttttgtttgaagttgct |
100 |
Q |
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| T |
6187063 |
tagatacctttagccgacgaccacttcgaaccaaatcaatttgaatgtcattgctaacttgagacaatttatcaaattgtttgttttgtttgaagttgct |
6187162 |
T |
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| Q |
101 |
tattgatgacatcgaaataacgatgaaaacagctaggaaaatgctaccaccatcataccaaccttctttgattccatgttgcttgataccaaagccaagt |
200 |
Q |
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| T |
6187163 |
tattgatgacatcgaaataacgatgaaaacagctaggaaaatgctaccaccatcataccaaccttctttgattccatgttgcttgataccaaagccaagt |
6187262 |
T |
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| Q |
201 |
gaaagtgtagcacaaaccaaaaggattagaattgtaacatccttaaaagcttcaataacaaaatgaatgaaactcttagaaggtggttttt |
291 |
Q |
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| T |
6187263 |
gaaagtgtagcacaaaccaaaaggattagaattgtaacatccttaaaagcttcaataacaaaatgaatgaaactcttagaaggtggttttt |
6187353 |
T |
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Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 291
Target Start/End: Original strand, 4244009 - 4244297
Alignment:
| Q |
3 |
gatacctttagccgacgaccacttcgaaccaaatcaatttgaatgtcattgctaacttgagacaatttatcaaattgtttgttttgtttgaagttgctta |
102 |
Q |
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||||||||| | || || ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4244009 |
gataccttttgtcggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttgttttgtttaaagttgctta |
4244108 |
T |
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| Q |
103 |
ttgatgacatcgaaataacgatgaaaacagctaggaaaatgctaccaccatcataccaaccttctttgattccatgttgcttgataccaaagccaagtga |
202 |
Q |
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| T |
4244109 |
ttgcagacattgaaataacaatgaaaacagctagaaaaatgctgccaccatcataccaaccttctttgattccatgttccttgattccaaagccaagtga |
4244208 |
T |
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| Q |
203 |
aagtgtagcacaaaccaaaaggattagaattgtaacatccttaaaagcttcaataacaaaatgaatgaaactcttagaaggtggttttt |
291 |
Q |
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||| ||||||||||||||||| || |||||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| |
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| T |
4244209 |
aagagtagcacaaaccaaaagaataagaattgttacatccttaaaagcttcaacaacaaaatgaaagaaacttttagaaggtggttttt |
4244297 |
T |
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