View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3097_low_54 (Length: 302)
Name: NF3097_low_54
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_54 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 14527597 - 14527871
Alignment:
| Q |
10 |
attattctaggatgtaggttcatgcattgagaaaaattaacaaacctagtagtgataaatcttgagtatgaatccaatttgttgacttgtacaggtaatg |
109 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14527597 |
attatgctaggatgtagcttcatgcattgagaaaaattaacaaacctagtagtgataaatcttgagtatgaatccaatttgttgacttgtacaggtaatg |
14527696 |
T |
|
| Q |
110 |
tagtagtgatagtcgttgcagtagttagttcggtgatcgttgtggtggttgccgtaacttttggagcttatatctggaaacagagatacattcaaaagaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14527697 |
tagtagtgatagtcgttgcagtagttagttcggtgatcgttgtggtggttgccgtaacttttggagcttatatctggaaacagagatacattcaaaagaa |
14527796 |
T |
|
| Q |
210 |
aagaagaggtataagatttaatagcttatctctatatttgttaataataatagcaaacctagaatatcacaccattt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14527797 |
aagaagaggtataagatttaatagcttatctc--tatttgttaataataatagcaaacctagaatatcacaccattt |
14527871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University