View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3097_low_55 (Length: 295)

Name: NF3097_low_55
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3097_low_55
NF3097_low_55
[»] chr3 (1 HSPs)
chr3 (1-295)||(52379718-52380012)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 52379718 - 52380012
Alignment:
Q  1 ctcaaaacgtctgttctcttctcttgtccaacccatgctgctaatttgtctcaatatataaactcaaaaacaaaagaagaagggaaacaattgtgtttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52379718 ctcaaaacgtctgttctcttctcttgtccaacccatgctgctaatttgtctcaatatataaactcaaaaacaaaagaagaagggaaacaattgtgtttga 52379817  T
Q  101 agtagaaaacacaaaatagtaagagagttgttgtttgtttattatgagaaaagatggtgacttgaactagctcaatgtcttaatgtagagactttggggg 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  52379818 agtagaaaacacaaaacagtaagagagttgttgtttgtttattatgagaaaatatggtgacttgaactagctcaatgtcttaatgtagagactttggggg 52379917  T
Q  201 ttaaggagaaattgtggtactagttccttaaataagggagtgtcaagtgggggtgtttgcaagttggctattactttttacacgatattattcca 295  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52379918 ttaaggagaaattgtggtactagttccttaaataagggattgtcaagtgggggtgtttgcaagttggctattactttttacacgatattattcca 52380012  T

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