View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3097_low_56 (Length: 292)

Name: NF3097_low_56
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3097_low_56
NF3097_low_56
[»] chr1 (8 HSPs)
chr1 (1-282)||(47316285-47316566)
chr1 (75-283)||(47319824-47320032)
chr1 (98-246)||(47319634-47319782)
chr1 (151-282)||(47316177-47316308)
chr1 (178-283)||(47307046-47307151)
chr1 (151-244)||(47314438-47314531)
chr1 (190-282)||(47311133-47311225)
chr1 (1-57)||(47307127-47307183)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 47316285 - 47316566
Alignment:
Q  1 atctcacttccattggatgatgatttacaacaacgtgatcgatcagcactcgaagatcgagcaatggcgtttttaacagaagttaaggttacatttgaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47316285 atctcacttccattggatgatgatttacaacaacgtgatcgatcagcactcgaagatcgagcaatggcgtttttaacagaagttaaggttacatttgaag 47316384  T
Q  101 ataagatggaaaagttcaatgaattcttgaaactcctagctgattaccaagccaaaagaattgatgtaagagttgtcaaagaaggaatgatggagttgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47316385 ataagatggaaaagttcaatgaattcttgaaactcctagctgattaccaagccaaaagaattgatgtaagagttgtcaaagaaggaatgatggagttgtt 47316484  T
Q  201 taaagaccataaaaatttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattggatgatgat 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47316485 taaagaccataaaaatttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattggatggtgat 47316566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 75 - 283
Target Start/End: Original strand, 47319824 - 47320032
Alignment:
Q  75 aacagaagttaaggttacatttgaagataagatggaaaagttcaatgaattcttgaaactcctagctgattaccaagccaaaagaattgatgtaagagtt 174  Q
    ||||| |||||| ||| |||||  | |||||||||||||||   ||||||||||||||||| ||| ||||||| | ||||||||||||||| | ||||||    
T  47319824 aacagcagttaaagttgcatttccatataagatggaaaagtatgatgaattcttgaaactcgtagttgattacaatgccaaaagaattgatatgagagtt 47319923  T
Q  175 gtcaaagaaggaatgatggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattgg 274  Q
     ||||||||||| |||||||||||||||||||||||||| |||||||||  ||| ||||||| |  ||||||||||||||||||||||||||| ||||||    
T  47319924 ttcaaagaaggactgatggagttgtttaaagaccataaagatttacttttgggactcaacacttggttgccagagggacacaaaatctcacttccattgg 47320023  T
Q  275 atgatgatg 283  Q
    ||| |||||    
T  47320024 atggtgatg 47320032  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 98 - 246
Target Start/End: Original strand, 47319634 - 47319782
Alignment:
Q  98 aagataagatggaaaagttcaatgaattcttgaaactcctagctgattaccaagccaaaagaattgatgtaagagttgtcaaagaaggaatgatggagtt 197  Q
    ||||||||| |||||||||  |||| ||| |||||||||||  ||||| |   |||||||||||||||  ||||||  ||||||||||||| ||||||||    
T  47319634 aagataagaaggaaaagtttgatgatttcatgaaactcctacatgatttcagggccaaaagaattgatagaagagtcatcaaagaaggaattatggagtt 47319733  T
Q  198 gtttaaagaccataaaaatttactttcaggattcaacaccttcttgcca 246  Q
    ||| ||||| ||| || ||||| ||||| ||||||||| ||||||||||    
T  47319734 gttgaaagaacatcaagatttaatttcaagattcaacatcttcttgcca 47319782  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 151 - 282
Target Start/End: Original strand, 47316177 - 47316308
Alignment:
Q  151 gccaaaagaattgatgtaagagttgtcaaagaaggaatgatggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgccagagg 250  Q
    |||||||||||||||  |||||| |||||||||||| | | ||||||||| ||||| ||| || ||||| ||| | ||||||||| ||||||||||   |    
T  47316177 gccaaaagaattgatagaagagtcgtcaaagaaggagttacggagttgttgaaagaacatcaagatttaattttaagattcaacatcttcttgccaccag 47316276  T
Q  251 gacacaaaatctcactttcattggatgatgat 282  Q
    ||||  ||||||||||| ||||||||||||||    
T  47316277 gacatgaaatctcacttccattggatgatgat 47316308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 283
Target Start/End: Original strand, 47307046 - 47307151
Alignment:
Q  178 aaagaaggaatgatggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattggatg 277  Q
    ||||||||||||| ||||||||| ||||| ||||||  |||| ||||| ||||||||| ||||||||||   |||||  ||||||||||| |||||||||    
T  47307046 aaagaaggaatgacggagttgttaaaagatcataaaggtttaatttcaagattcaacatcttcttgccaccaggacaagaaatctcacttccattggatg 47307145  T
Q  278 atgatg 283  Q
    ||||||    
T  47307146 atgatg 47307151  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 47314438 - 47314531
Alignment:
Q  151 gccaaaagaattgatgtaagagttgtcaaagaaggaatgatggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgc 244  Q
    |||||||||||||||  ||||||||||||||||||| | ||||||||||||||||| ||| || ||||| ||||| |||||| || ||||||||    
T  47314438 gccaaaagaattgataaaagagttgtcaaagaaggagttatggagttgtttaaagagcatcaagatttaatttcaagattcagcatcttcttgc 47314531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 282
Target Start/End: Original strand, 47311133 - 47311225
Alignment:
Q  190 atggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattggatgatgat 282  Q
    |||||||| |||||||| ||| || ||||  ||||| ||||||||| |||| |||||   |||||  ||||||||||| ||||||||||||||    
T  47311133 atggagttatttaaagaacatcaatatttgatttcaagattcaacatcttcatgccatcaggacatgaaatctcacttccattggatgatgat 47311225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 47307127 - 47307183
Alignment:
Q  1 atctcacttccattggatgatgatttacaacaacgtgatcgatcagcactcgaagat 57  Q
    ||||||||||||||||||||||||  ||||| | ||||| ||| |||| ||||||||    
T  47307127 atctcacttccattggatgatgatgaacaacgaggtgatggattagcattcgaagat 47307183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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