View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_57 (Length: 282)
Name: NF3097_low_57
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 39511384 - 39511254
Alignment:
| Q |
12 |
atgaatacaagatcttcttatagtagggattccaaatttgtgtttagatttgcgttgtagttataattcttgctttcttatgactaaaacttcaaaacta |
111 |
Q |
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| T |
39511384 |
atgaatacaagatcttcttatagtagggatttcaaatttgtgtttagatttgcgttgtagttataattcttgcttttttatgactaaaacttc-aaatta |
39511286 |
T |
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| Q |
112 |
aattcgtgtttgaattttgcgttatgttttgg |
143 |
Q |
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| T |
39511285 |
aatttgtgtttgaattttgcgttctattttgg |
39511254 |
T |
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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 257
Target Start/End: Complemental strand, 39511195 - 39511107
Alignment:
| Q |
167 |
ttgatcgttgcatattcgaagggactcacaccatggtttcatatgtaagctcacgcttatgatgcatgtgggttaagagggattcatacct |
257 |
Q |
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| T |
39511195 |
ttgatggttgcatgttcgaagggattcac--catggtttcatatgtaagctcgcgcttatgacgcatgtgggttgagagggattcatacct |
39511107 |
T |
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