View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_58 (Length: 273)
Name: NF3097_low_58
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1357242 - 1357021
Alignment:
| Q |
1 |
tccccttcttttgtacttctctgcaactttagtattttaatcaaattatcttgtaatgcttcattgcaatcaataaatgatacaaaatattcaattctta |
100 |
Q |
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| T |
1357242 |
tccccttcttttgtacttctctgcaactttagtattttaatcaaattatcttgtaatgcttcattgcaatcaataaatgatacaaaatattcaattctta |
1357143 |
T |
|
| Q |
101 |
atcatttagctgagaaattgttactcttaaagggtcaaacccttacagattcctttgaaacgaaagcagatatttcatcctttctcatcataatcactga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
1357142 |
atcatttagctgagaaattgttactcttaaagggtcaaacccttacagattcctttgaaacaaaagcagatatttcatcccttctcatcataatcactga |
1357043 |
T |
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| Q |
201 |
attcacaaaagtgaactgaaaa |
222 |
Q |
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| T |
1357042 |
attcacaaaagtgaactgaaaa |
1357021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 166 - 269
Target Start/End: Complemental strand, 1352279 - 1352171
Alignment:
| Q |
166 |
gcagatatttcatcctttctcatcataatcactgaattcacaaaagtgaactgaaaacaaggaacagtaaatat-----gtggatactgactttgcaaat |
260 |
Q |
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| T |
1352279 |
gcagatatttcatctcttctcatcataataactgaattcacaaaagtgaactgaaaacaaggaacagtaaatattagtagtagatactgactttacaaat |
1352180 |
T |
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| Q |
261 |
attcttctc |
269 |
Q |
| |
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||||||||| |
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| T |
1352179 |
attcttctc |
1352171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 234 - 269
Target Start/End: Complemental strand, 1357023 - 1356988
Alignment:
| Q |
234 |
aaatatgtggatactgactttgcaaatattcttctc |
269 |
Q |
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| T |
1357023 |
aaatatgtggatactgactttgcaaatattcttctc |
1356988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 166 - 269
Target Start/End: Complemental strand, 36717324 - 36717215
Alignment:
| Q |
166 |
gcagatatttcatcctttctcatcataatcactga----attcacaaaagtgaactgaaaacaaggaacagtaaatat--gtggatactgactttgcaaa |
259 |
Q |
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| T |
36717324 |
gcagatatttcatcccttctcatcataataactgactgaattcacaaaagtgaactgaaaacaaggaacagcgaatattagtagatactgactttgcaaa |
36717225 |
T |
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| Q |
260 |
tattcttctc |
269 |
Q |
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|||||||||| |
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| T |
36717224 |
tattcttctc |
36717215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 28034725 - 28034679
Alignment:
| Q |
38 |
taatcaaattatcttgtaatgcttcattgcaatcaataaatgatacaa |
85 |
Q |
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| T |
28034725 |
taatcaaattatcttgtaatgctt-attgcaatcaataaatgatacaa |
28034679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 44146681 - 44146641
Alignment:
| Q |
40 |
atcaaattatcttgtaatgcttcattgcaatcaataaatga |
80 |
Q |
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||||| ||||||||||||| |||| |||||||||||||||| |
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| T |
44146681 |
atcaacttatcttgtaatgtttcaatgcaatcaataaatga |
44146641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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