View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3097_low_61 (Length: 262)
Name: NF3097_low_61
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_61 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 26267762 - 26267988
Alignment:
| Q |
11 |
cagagaaatgtgtgggaggtgttacactgatatgattacacgtggcaacaagcccaagtgcccctaattcaacttgtccaagcttaaattagaattcccc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26267762 |
cagagaaatgtgtgggaggtgttacactgatatgattacacgtggcaacaagcccaagtgcccctaattcaacttgtccaagcttaaattagaattcccc |
26267861 |
T |
|
| Q |
111 |
ttatgnnnnnnnnnnnnnnnngtctttattttatttctagcattatgtatgagttcgtctattaatttgtgagttagttatcctcaatgagtaagacgtg |
210 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26267862 |
ttatg---------tttttttgtctttattttgtttctagcattatgtatgagtttgtctattaatttgtgagttagttatccttaatgagtaagacgtg |
26267952 |
T |
|
| Q |
211 |
gaataaacaactacattttttgcttaatgagtttgt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
26267953 |
gaataaacaactacattttttgcttaatgagtttgt |
26267988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University