View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_63 (Length: 256)
Name: NF3097_low_63
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 47294298 - 47294095
Alignment:
| Q |
13 |
agcaaagggatattcaagtnnnnnnntggaacaaattccatcatttaataattattagtgtatatataaatatttggattatacacccaaagaaaaacaa |
112 |
Q |
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| T |
47294298 |
agcaaagggatattcaagtaaaaaaatggaacaaattccatcatttaataatgattagtgtatatataaatatttggattatacacccaaagaaaaacaa |
47294199 |
T |
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| Q |
113 |
ttgcctgcaattataaactaattacaagctctgcatctttagtttaatgaaaaggacgaaagagaaatatttccttgtctaaaagtctttgtctaaatac |
212 |
Q |
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| T |
47294198 |
ttgcctgcaattataaactaattacaagctctgcatctttagtttaatgaaaaggacgaaagagaaatatttccttgtctaaaagtctttgtctaaatac |
47294099 |
T |
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| Q |
213 |
aaat |
216 |
Q |
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|||| |
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| T |
47294098 |
aaat |
47294095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 56043861 - 56043786
Alignment:
| Q |
85 |
tttggattatacacccaaagaaaaacaattgcctgcaattataaactaattacaagctctgcatctttagtttaat |
160 |
Q |
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||||| ||||||||||||| | |||||||||||||||||||||||||||||| | |||||||||| |||||||| |
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| T |
56043861 |
tttgggttatacacccaaacataaacaattgcctgcaattataaactaattatacattctgcatcttcagtttaat |
56043786 |
T |
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