View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3097_low_64 (Length: 255)
Name: NF3097_low_64
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_64 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 47249025 - 47248796
Alignment:
| Q |
18 |
ttaagtccctaaactttgaaatgggcaaccctaatgtgataacatttcttaagtaaggacattttttactgtaaagttgaatatataaatccttgctgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47249025 |
ttaagtccctaaactttgaaatgggcaaccctaatgtgataacatttcttaagtaaggacatttattactgtaaagttgaatatataaatccttgctgaa |
47248926 |
T |
|
| Q |
118 |
atgaaataattggactgaccatgtttatgtgcaactgttatgtttccctttcaggaggtttattgggattgcttgtgagaatcgaaaggttagttgaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47248925 |
atgaaataattggactgaccatgtttatgtgcaactgttatgtttccctttcaggaggtttattgggattgcttgtgagaatcgaaaggttagttgaaat |
47248826 |
T |
|
| Q |
218 |
attgttttattactattagttgatgatgtc |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
47248825 |
attgttttattactattagttgatgatgtc |
47248796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 232
Target Start/End: Complemental strand, 47242574 - 47242366
Alignment:
| Q |
24 |
ccctaaactttgaaatgggcaaccctaatgtgataacatttcttaagtaaggacattttttactgtaaagttgaatatataaatccttgctgaaatgaa- |
122 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || |||||||| |||||| |||||||||| ||| || |||||||| |||| ||||| ||||||||| |
|
|
| T |
47242574 |
ccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgtgaatttgaatatctaaagccttgttgaaatgaag |
47242475 |
T |
|
| Q |
123 |
ataattggactgaccatgtttatgtgcaactgttatgtttccctttcaggaggtttattgggattgcttgtgagaatcgaaaggttagttgaaatattgt |
222 |
Q |
| |
|
|||||||||| | ||||||| | || || | || || | ||||||||| ||| |||||||||||| |||||||| |||||| | ||||| | |||| |
|
|
| T |
47242474 |
ttaattggactaattctgtttattttcacttgctgtgatt-catttcaggagttttgttgggattgcttctgagaatcaaaaggtaatttgaattgttgt |
47242376 |
T |
|
| Q |
223 |
tttattacta |
232 |
Q |
| |
|
|||||||||| |
|
|
| T |
47242375 |
tttattacta |
47242366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University