View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_65 (Length: 255)
Name: NF3097_low_65
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 16509285 - 16509507
Alignment:
| Q |
21 |
actacagtcacgtgcacaaagtttccaaaacaacacaagaaaccaaagcaccaacacacgcgcttcacttaccttaatttcatctttctactctcaaaaa |
120 |
Q |
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| T |
16509285 |
actacagtcacgtgcacaaagtttccaaaacaacacaagaaaccaaagcaccaacacacgcgcttcacttaccttaattttatctttctactctcaaaaa |
16509384 |
T |
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| Q |
121 |
cctcaccttaacccttattatggccaccaccgaacaaccccaaaacggcaccgccatactcccaccggaaaatccctc------cgcacaacaactcacc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
16509385 |
cctcaccttaacccttattatggccaccaccgaacaaccccaaaacggcaccgccacactcccaccggaaaatccctccgccgacgcacaacaactcacc |
16509484 |
T |
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| Q |
215 |
atcgacaccgaagcaaccaccaa |
237 |
Q |
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||||||||||||||||||||||| |
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| T |
16509485 |
atcgacaccgaagcaaccaccaa |
16509507 |
T |
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