View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_69 (Length: 252)
Name: NF3097_low_69
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 47 - 207
Target Start/End: Original strand, 51005162 - 51005305
Alignment:
| Q |
47 |
attattatagggtaaatatacaattttgttttggtaagttagggtcatgcaaattaaatcaaagttaatgtgtcgccaaatacaattaattaataggtgt |
146 |
Q |
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| T |
51005162 |
attattgtagggtaaatatacaattttgttttggtaagttagggtcatgcaaattaaatcaaagttaatgtgtcgccaaatacaattaattaat------ |
51005255 |
T |
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| Q |
147 |
aatgtgttacgctcgtgctatctatctaactgttgtatacatacggagtatatagtatatt |
207 |
Q |
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| T |
51005256 |
-----------gtcgtgctatctatctaactgttgtatacatacggagtatatagtatatt |
51005305 |
T |
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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 51004755 - 51004788
Alignment:
| Q |
18 |
catgacacgtggggatcatgacatatattattat |
51 |
Q |
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| T |
51004755 |
catgacacgtggggatcatgacatatattattat |
51004788 |
T |
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